PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000667.1.g00007.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 733aa    MW: 80197.4 Da    PI: 5.7989
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000667.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.75.7e-1013747322374
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                     +++L+++Ae +++g+  laq +Larl+++ sp g+p+qR+a yf+eAL+  l++      ++ + s+ s    + ++aa
  FANhyb_rscf00000667.1.g00007.1 374 IDQLVNAAELIETGNPLLAQGILARLNHQLSPIGKPFQRAALYFKEALELLLNN----SHSSANLSPFS---LIYKIAA 445
                                     689**************************************************9....33344566666...99***** PP

                            GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeel 158
                                     +k fse+sP+l+f+++t+NqaIle+veg +rvH+iDfdi++G+QW++++q+ a R+ ++ppsl+iT+++ ++ +++ el
  FANhyb_rscf00000667.1.g00007.1 446 YKSFSEISPVLQFANFTCNQAILESVEGYNRVHVIDFDIGYGGQWASFMQEVALRNgGSPPSLKITAFVCSSVHDEFEL 524
                                     ********************************************************66688*********9999***** PP

                            GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                                       t+e+L++fA+el++ fe +++  ++l+    + L ++  +++aV + l + ++l++++sl+     vL++vk+lsPk
  FANhyb_rscf00000667.1.g00007.1 525 AFTQENLKNFASELNLAFELEIVSIEALN-SGSWPLPLHGSDSVAVAVNLPIGSFLNSPLSLPL----VLRFVKQLSPK 598
                                     **********************7555444.45899************************99999....*********** PP

                            GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                                     +vv  e+ +d+++ +F +++++al+ ys+l++sl+a   ++ ++ +k+Er ll+++i+++v+ ++ +   +++   +Wr
  FANhyb_rscf00000667.1.g00007.1 599 IVVSLERGSDRTDIPFPHQIIQALHSYSSLLESLDAV-NANLDALQKIERYLLQPSIEKIVMGRHLS--PKRTPTPSWR 674
                                     **********************************887.5666999*****************99988..667779**** PP

                            GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                       + ++GF+p+++s+++++qa++l++++++ g++ve+++ slvl+W+++ Lvs+SaWr
  FANhyb_rscf00000667.1.g00007.1 675 TLFLSSGFSPLTFSNFTESQAECLVQRTPVGGFHVEKRQSSLVLCWQRKDLVSASAWR 732
                                     *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.105347712IPR005202Transcription factor GRAS
PfamPF035142.0E-98374732IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MPLPFEEFQG KGVLDFSSAA SSSDLLGSLP PQGHHQQPQK WKENCYVGST EPTSVLDTRR  60
SPSPPTSSST LSSSHGSGGG SGSTDTTTTT GVAAAPVENK ASEAVGVEEA KCGPPLGMED  120
WESVLSESPG QEQSILRLIM SDIEDPSLGL NKLLQSGGGS HHDMGFNLGF EDQGYGAFEE  180
HNTGSLNLGM SSIVDPSLQA TSCSEIPFNG ANAGVFSASA NNLFPGALPP GLFQQQQQLV  240
EPVDEKPQIF NPQMVMNQNQ AQFNQNPAMF MPLTYSQLQD HHFLSPPPAK RHQSGGFGPS  300
YPGQRLPFLN PGQELLSRVQ QQQQQQHHHQ QQLPMLPQHL QHRPVMLATK DKMVNNLEGD  360
KELMNNHQFH QAIIDQLVNA AELIETGNPL LAQGILARLN HQLSPIGKPF QRAALYFKEA  420
LELLLNNSHS SANLSPFSLI YKIAAYKSFS EISPVLQFAN FTCNQAILES VEGYNRVHVI  480
DFDIGYGGQW ASFMQEVALR NGGSPPSLKI TAFVCSSVHD EFELAFTQEN LKNFASELNL  540
AFELEIVSIE ALNSGSWPLP LHGSDSVAVA VNLPIGSFLN SPLSLPLVLR FVKQLSPKIV  600
VSLERGSDRT DIPFPHQIIQ ALHSYSSLLE SLDAVNANLD ALQKIERYLL QPSIEKIVMG  660
RHLSPKRTPT PSWRTLFLSS GFSPLTFSNF TESQAECLVQ RTPVGGFHVE KRQSSLVLCW  720
QRKDLVSASA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-313737324375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306953.10.0PREDICTED: scarecrow-like protein 6
TrEMBLA0A2P6SFR50.0A0A2P6SFR5_ROSCH; Putative transcription factor GRAS family
STRINGXP_004306953.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-145GRAS family protein