PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000672.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 302aa MW: 33930.8 Da PI: 6.8661

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000672.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.9	7.3e-27	191	240	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++led+++yF+lpi++AAkeL+v++T+LKr+CR+++I+RWPhRkiksl FANhyb_rscf00000672.1.g00004.1 191 DALELEDIKQYFNLPITKAAKELKVGVTLLKRRCRELNIMRWPHRKIKSL 240 6799********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.723	174	261	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-23	193	240	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MVDSFDYLIN NSTNLGHHAM IESSGFSSSL CDSLVFDEML LREMVESLNT NVPSDVGQHE 60 VSMMVGSSGF SSTQCDSVVF DKKPISTMVE SFGNSSNVPS VFDHHEASMM TESAAAYSSS 120 HCNALVLYET PLSTIVDSFD YSDMPTPDLS DDEVSVKIES GYPSWGTSDI SCTRGTSNRG 180 RCSTQMKIKS DALELEDIKQ YFNLPITKAA KELKVGVTLL KRRCRELNIM RWPHRKIKSL 240 NSLIETMKRM GLRNEVKMLE ENKRLLELVP NMELTKRIKR LRQSIFKANY NKKKMSLSIS 300 LG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004309145.1	0.0	PREDICTED: uncharacterized protein LOC101293942 isoform X2
TrEMBL	A0A2P6SNY7	1e-161	A0A2P6SNY7_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004309145.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	8e-39	RWP-RK domain-containing protein