PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000673.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HB-other

Protein Properties

Length: 220aa MW: 24747.3 Da PI: 6.5237

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000673.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.4	1.4e-19	20	76	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR t++qle+Le++++ ++yps++ r+eL++kl+L++rq ++WF+ rR k++k FANhyb_rscf00000673.1.g00004.1 20 RTKRKMKTRSQLEALEKAYAVEQYPSESVRAELSAKLDLSDRQLQMWFCHRRLKDRK 76 689****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-19	4	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-17	14	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.568	17	77	IPR001356	Homeobox domain
SMART	SM00389	1.6E-16	19	81	IPR001356	Homeobox domain
CDD	cd00086	1.13E-15	20	77	No hit	No description
Pfam	PF00046	2.7E-17	20	76	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
METGSEGEKT RAQAQAQEIR TKRKMKTRSQ LEALEKAYAV EQYPSESVRA ELSAKLDLSD 60 RQLQMWFCHR RLKDRKPTPA TRKRQSNDSL AEATGVVSDE GLQQSIIEAR AVAFVEAQLG 120 EPLREDGPIL GLKFDSLPPD AFGSSIGLSY SVCMSPLFGS VNTSFLLEMM FIDVMSKIYC 180 CASTIGLVPE LRNHSWLMEE MEDRKCNACR QVQTVLNKFI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303092.1	1e-88	PREDICTED: uncharacterized protein LOC101301986 isoform X2
Swissprot	Q9FFH1	6e-38	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2P6RTY7	6e-78	A0A2P6RTY7_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004303092.1	4e-88	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15781	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	2e-40	Homeodomain-like transcriptional regulator