PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000687.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 334aa    MW: 37185.2 Da    PI: 6.9152
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000687.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32147205159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+++r ++d+++v++tYeg+Hnh+
  FANhyb_rscf00000687.1.g00006.1 147 LDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQIQRLSKDTSIVVTTYEGTHNHP 205
                                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-33133205IPR003657WRKY domain
SuperFamilySSF1182907.72E-28140206IPR003657WRKY domain
PROSITE profilePS5081128.828142207IPR003657WRKY domain
SMARTSM007742.1E-37147206IPR003657WRKY domain
PfamPF031069.4E-26148205IPR003657WRKY domain
SMARTSM007692.1E-5193297IPR013990Water stress and hypersensitive response domain
PfamPF031682.3E-9226296IPR004864Late embryogenesis abundant protein, LEA-14
Gene3DG3DSA:2.60.40.102.5E-7226305IPR013783Immunoglobulin-like fold
SuperFamilySSF1170703.27E-23226306No hitNo description
ProDomPD0109786.0E-30227307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009269Biological Processresponse to desiccation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEGGQEHMNP PPTSSSTPQL SLPLILPPQN PSYQLFTPSG LNPPPLPLLQ PHDHQLLNPL  60
DIDWISLLSG QAGHHGLVGH DQLNNYRAVP GMADLITASG SAGENAIEGD DDREQKGSKK  120
RKGGGYKMRK ATRPRFAFQT RSADDILDDG YRWRKYGQKA VKNSLYPRSY YRCTHHTCNV  180
KKQIQRLSKD TSIVVTTYEG THNHPCEKLM ETLTPLLRQM QFLSSVIASG RIPDPGSLKA  240
SGDTLIDVPV KVPHSIIITL VKDIATDWDI DYELELGLII DIPIVGNITI PLSRKGEIKL  300
PTLKDVIFGT NEEQKDSKEK EKEKDSQEKD KDSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yyc_A1e-3022730594172putative late embryogenesis abundant protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306730.11e-165PREDICTED: probable WRKY transcription factor 24
TrEMBLA0A2P6SI001e-132A0A2P6SI00_ROSCH; Putative transcription factor WRKY family
STRINGXP_004306730.11e-164(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.11e-55WRKY DNA-binding protein 43