PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000699.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 230aa    MW: 26323.7 Da    PI: 10.3913
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000699.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.7e-121482241999
                                     -HHH.HTT..---..--SEEEEEETTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                              B3  19 pkkfaeeh..ggkkeesktltledesgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                     p  f ++h   g+    k   ++ ++g++W +vkl    + ++ ++++GW eF++++++ +gD++ F+l +  e ++vv
  FANhyb_rscf00000699.1.g00001.1 148 PTAFYSKHlsAGN---YKFAFVKISRGNKWyKVKL--VPSCQTAFMSAGWAEFARDKKIMVGDVCAFELLK--ENKMVV 219
                                     7777777754222...2234445577877758999..*******************************876..566799 PP

                                     EEE-S CS
                              B3  95 kvfrk 99 
                                     ++++k
  FANhyb_rscf00000699.1.g00001.1 220 HILQK 224
                                     99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-51050IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-61183IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-14126223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-14127224IPR015300DNA-binding pseudobarrel domain
CDDcd100177.20E-10132222No hitNo description
SMARTSM010190.0024134225IPR003340B3 DNA binding domain
PfamPF023621.1E-9148224IPR003340B3 DNA binding domain
PROSITE profilePS508639.742148225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
RTMVRKNGVK EKRPSFFKVI LPGYSTEQLR IPPQFLKHLR KDLSSKATLS LNMTSVFMEC  60
DFLVFTYEGK IHFSIACFDR SCCERVDFPN GTCKESTVAK STKRPCHKPR KHNSAADNTA  120
KESAISFKSK YPHYKKAINK TYCVYSTPTA FYSKHLSAGN YKFAFVKISR GNKWYKVKLV  180
PSCQTAFMSA GWAEFARDKK IMVGDVCAFE LLKENKMVVH ILQKGSRSSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024164885.11e-118B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A2P6PMT21e-113A0A2P6PMT2_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004290392.12e-71(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-12B3 family protein