PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000701.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 731aa    MW: 78925.5 Da    PI: 6.0732
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000701.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.1e-32304361260
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  FANhyb_rscf00000701.1.g00002.1 304 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 361
                                     7****************************************.***************85 PP
2WRKY102.81.9e-32520578159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  FANhyb_rscf00000701.1.g00002.1 520 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 578
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.24E-25301362IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-28301362IPR003657WRKY domain
SMARTSM007746.4E-36303361IPR003657WRKY domain
PfamPF031061.1E-24304360IPR003657WRKY domain
PROSITE profilePS5081123.158304362IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.3E-37505580IPR003657WRKY domain
SuperFamilySSF1182901.96E-28512580IPR003657WRKY domain
PROSITE profilePS5081138.32515580IPR003657WRKY domain
SMARTSM007741.9E-37520579IPR003657WRKY domain
PfamPF031067.5E-25521578IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MDDNVAIIGD WLPPSPSPRD FFSSMLVDGI GSRSFLDSPN SNKAEDFFLG SREGSTSGKN  60
LSQGNGTGDE ITEMGSFSEY KSNTRGGLVE RIAARAGFNA PRLNTESIRS SDLSLSSDVR  120
SPYLTIPPGL SPTTLLDSPV FLSNSLAQPS PTTGKYPFVS NGHSRNSTLM TEAADKANFF  180
EDLNSSFAFK PLGESGSFFL GPTSKQTFPS IEVSVQSENS SQNMEPTKVQ NQNANNFQLQ  240
PDFSRTSTEK DNGANTVSAD PRGFDTVGGS TEHSPPPDEQ PEEEGDQRGG GDSMAATGGG  300
TPSEDGYNWR KYGQKQVKGS EYPRSYYKCT HPNCQVKKKV ERSHEGHITE IIYKGAHNHP  360
KPPPNRRSGA IGSSNPLIDM RSDVLEQGGP QTGADGDLVW ASAQKATGGA PDWKHDNLEV  420
TSSASAGPDY GQQSTSMQAQ NGAHLESGDV VDASSTFSND EDEDDRGTHG SVSLVYDGEG  480
DESESKRRKI EAYATEMSGA TRAIREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP  540
RSYYKCTNAG CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHVNS GPSGNMSGQV  600
SGSATQTHPH RPEPSQVHNS MARFERPMSM GSFSLPGRQQ LGPPQGFSFG MNQPGLANLA  660
MAGFGPGQHK VPVLPVHHPY FAQQRQVSEM GFMLPKGEPK VEPMSEPGLN MSNASSVYQQ  720
LMSRLPLGPQ M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36304581878Probable WRKY transcription factor 4
2lex_A2e-36304581878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294869.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_011461536.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_011461537.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2P6QL730.0A0A2P6QL73_ROSCH; Putative transcription factor WRKY family
STRINGXP_004294869.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]