PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000722.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 248aa    MW: 27504.9 Da    PI: 8.791
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000722.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33102158258
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                     +Dgy+WrKYGqK vk+s+fprsY+rCtsa+C+vkk+ver+ +dp++v++tYeg+H+h
  FANhyb_rscf00000722.1.g00001.1 102 EDGYRWRKYGQKAVKNSPFPRSYFRCTSASCNVKKRVERCVNDPSIVVTTYEGQHTH 158
                                     8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3486160IPR003657WRKY domain
SuperFamilySSF1182906.41E-2993159IPR003657WRKY domain
PROSITE profilePS5081130.45896161IPR003657WRKY domain
SMARTSM007743.0E-39101160IPR003657WRKY domain
PfamPF031062.9E-26102158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
ISAPPQVLLP TTSIIDVAKE YSVNPSTPNS SSISSASSEA VNEEPLTDNK AAALQQEEDD  60
DGDQPESKKG SKANQKRKKT TEKKPRQPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF  120
PRSYFRCTSA SCNVKKRVER CVNDPSIVVT TYEGQHTHLS PLMSPPPPPA TALSSILMPR  180
TLFSHYQQQQ GLQPFEGNQT SNSCFATPNR SFLNERRFCC PAGGSALMTD HGLLQDIVPS  240
SMLKQVDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2791161777Probable WRKY transcription factor 4
2lex_A1e-2791161777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288542.11e-179PREDICTED: probable WRKY transcription factor 23
SwissprotO229006e-54WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2P6RFE91e-122A0A2P6RFE9_ROSCH; WRKY transcription factor
STRINGXP_004288542.11e-178(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-45WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]