PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000750.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 226aa    MW: 24725.7 Da    PI: 9.8465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000750.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-1999149155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     + y+GVr++  +g+WvAeIr p   + r  r +lg+f ta eAa a+++a+++++g
  FANhyb_rscf00000750.1.g00003.1  99 CNYRGVRQRT-WGKWVAEIRSP---N-RgSRLWLGTFPTAIEAALAYDEAARAMYG 149
                                     56*****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-1499149IPR001471AP2/ERF domain
CDDcd000185.00E-3199157No hitNo description
PROSITE profilePS5103222.036100157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-32100158IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-21100157IPR016177DNA-binding domain
SMARTSM003801.3E-35100163IPR001471AP2/ERF domain
PRINTSPR003676.0E-10101112IPR001471AP2/ERF domain
PRINTSPR003676.0E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MPAWRVVALT LVWSRGVRLG QVSRCIPAQY NLDFMTNLKK VHTKQDGSSP VAEILAKWKE  60
YNDHLESSND GSKPTRKVPA KGSRKGCMKG KGGPENSRCN YRGVRQRTWG KWVAEIRSPN  120
RGSRLWLGTF PTAIEAALAY DEAARAMYGS AARLNFPKVT FSSSGRATVL APSCVATSAG  180
SESSGTSGHS EDFSPQDKVN SHSPHIVNND VIDLNQMDLN QTEEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-18100157260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-18100157563ATERF1
3gcc_A3e-18100157563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460156.11e-141PREDICTED: putative dehydration-responsive element-binding protein 2H
SwissprotQ8LFR23e-51DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A3S8T9021e-140A0A3S8T902_FRAAN; Transcription factor ERF28
STRINGXP_004293490.11e-117(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.12e-43ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]