PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000755.1.g00006.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 388aa MW: 44088.8 Da PI: 5.6923

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000755.1.g00006.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	247.3	6.3e-76	97	384	2	298
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 ++ Ll A+av++++ + a + L++l + +s gd++qR++ayf+ +Laarl+ s ++ ++ ++t+ +ee+ a FANhyb_rscf00000755.1.g00006.1 97 IRMLLITATAVNENNVSSALENLTELYKSVSLCGDSVQRVVAYFADGLAARLLTRKSPFFDMISKEPTH----EEEFVA 171 6789999*********************************************999999999888886....788899 PP GRAS 81 lklfsevsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspes 152 +++++ vsP+++f+h+taNqaI ea+e+e + +H+iDfd+s+G+QWp+L+q+L+++ ++ slRiTg+g+ FANhyb_rscf00000755.1.g00006.1 172 FTALYRVSPYYQFAHFTANQAIIEAFEKEedknnRSLHVIDFDVSYGFQWPSLIQSLSEKGssGSRISLRITGFGR--- 247 99*********************9988777789*****************998644455*****... PP GRAS 153 gskeeleetgerLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLkl 230 s +el+et++rL +f + + ++ fef+ l l+ +l +Lr k++E++aVnlv++l +l ++ ++++ Lk FANhyb_rscf00000755.1.g00006.1 248 -SLDELRETENRLLSFSKGCrNLVFEFQGL----LHGSNLINLRKKRNETIAVNLVFHLNSLN-NDIKISD----SLKS 316 .9***********98648***8....7788889**************9997.4555555....8* PP GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 v l+P +v +veqe +++ sFl rf+e+l+y++a+fdsl+ lp es er ++E+ lg+ei++++ FANhyb_rscf00000755.1.g00006.1 317 VHLLNPSIVMLVEQEGSRSPRSFLSRFMESLHYFAAMFDSLDDCLPLESTERLSIEKNHLGKEIKSML 384 ****************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.546	70	388	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-73	97	384	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEDIDEEGDE LLNLSLAIVT NSGGERMKKR KRRDNTTSSD FSSSSYEGCE GKIFRLLQMR 60 EQMLKLEHKK KRGGGGNDNN IYDDIVDELD GKGLQLIRML LITATAVNEN NVSSALENLT 120 ELYKSVSLCG DSVQRVVAYF ADGLAARLLT RKSPFFDMIS KEPTHEEEFV AFTALYRVSP 180 YYQFAHFTAN QAIIEAFEKE EDKNNRSLHV IDFDVSYGFQ WPSLIQSLSE KGSSGSRISL 240 RITGFGRSLD ELRETENRLL SFSKGCRNLV FEFQGLLHGS NLINLRKKRN ETIAVNLVFH 300 LNSLNNDIKI SDSLKSVHLL NPSIVMLVEQ EGSRSPRSFL SRFMESLHYF AAMFDSLDDC 360 LPLESTERLS IEKNHLGKEI KSMLNYDN

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEDIDEEGDE LLNLSLAIVT NSGGERMKKR KRRDNTTSSD FSSSSYEGCE GKIFRLLQMR  60
EQMLKLEHKK KRGGGGNDNN IYDDIVDELD GKGLQLIRML LITATAVNEN NVSSALENLT  120
ELYKSVSLCG DSVQRVVAYF ADGLAARLLT RKSPFFDMIS KEPTHEEEFV AFTALYRVSP  180
YYQFAHFTAN QAIIEAFEKE EDKNNRSLHV IDFDVSYGFQ WPSLIQSLSE KGSSGSRISL  240
RITGFGRSLD ELRETENRLL SFSKGCRNLV FEFQGLLHGS NLINLRKKRN ETIAVNLVFH  300
LNSLNNDIKI SDSLKSVHLL NPSIVMLVEQ EGSRSPRSFL SRFMESLHYF AAMFDSLDDC  360
LPLESTERLS IEKNHLGKEI KSMLNYDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-43	104	384	27	304	Protein SCARECROW
5b3h_A	3e-43	104	384	26	303	Protein SCARECROW
5b3h_D	3e-43	104	384	26	303	Protein SCARECROW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	KKRKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292490.1	0.0	PREDICTED: scarecrow-like protein 18
TrEMBL	A0A2P6PR66	0.0	A0A2P6PR66_ROSCH; Putative transcription factor GRAS family
STRING	XP_004292490.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6200	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	4e-45	GRAS family protein