PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000770.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 289aa MW: 31560.5 Da PI: 4.5204

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000770.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.0003	262	285	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF++ L++H + H FANhyb_rscf00000770.1.g00003.1 262 FRCNPCNRSFNSDGALQNHTKAkH 285 89*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	33	No hit	No description
SuperFamily	SSF57667	8.66E-6	254	284	No hit	No description
PROSITE profile	PS50157	11.614	262	289	IPR007087	Zinc finger, C2H2
Pfam	PF12874	1.1E-4	262	284	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.2E-5	262	286	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	264	285	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MASKMRFWGV EVKSGESVVV EPGTTLVHLS QACLDEVKKG KGSDSISLFV KIGDQKLVIG 60 HLYAEKIPQL YFDLVFDKKF VLSHDGKTEP KVSLEEAKNE IKSDQKDSSS DDDDDESEDE 120 EFDQWSTVCL TVLTFPTVLA HSPICICVWT SALVKSVEDG SEDDDQSSDD DDDDDSDDED 180 DDSEEEHEET PNKVEGSNKH AAESSKTPVQ KKAKFVTPEK TGGKKGAVHT ATPYPSKQAV 240 KKPANSDQTK QQSSNSSGIG AFRCNPCNRS FNSDGALQNH TKAKHGAAK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466800.1	1e-135	PREDICTED: histone deacetylase HDT1
STRING	XP_004303033.1	1e-121	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1025	30	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	8e-19	histone deacetylase 2C