PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000792.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 541aa    MW: 61480.7 Da    PI: 4.4667
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000792.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS142.83.5e-441655382374
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                     ++lL ++Aea++ g++el + +L+ +se +sp g++++Rla+ + +      ++      + l+      ++ ++  aa
  FANhyb_rscf00000792.1.g00004.1 165 RHLLQAFAEAMEYGQKELEEVILSSMSEKVSPIGESLERLAFNLCQEVVDEHQQ----GGDYLKQ-----ESLKNFEAA 234
                                     89***************************************9866544444443....3333322.....236788899 PP

                            GRAS  81 lklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..... 153
                                     lk+f + +P+ +f+h +aN+aIlea+  e e+vHi+Dfd+++G+Q   +++aLa+R +   +l++T+++ +e++     
  FANhyb_rscf00000792.1.g00004.1 235 LKVFIQNFPYARFAHYVANSAILEAIPVEaETVHIVDFDMGEGIQLSQIIEALAQRFK---TLKVTAIKWEEEEsdcap 310
                                     9*************************99989*************************66...5******99887788999 PP

                            GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdev 227
                                      + + eet+++L++ A+++g++++ + +   ++edl + e++  +     +E la n++ +l ++ +++     +  e 
  FANhyb_rscf00000792.1.g00004.1 311 PHWTFEETKKQLQNHARSFGLNLKLEQV---AMEDL-VTEIKKANkrgggKEFLAFNCMNSLPHMRRKRSRR--HVMEY 383
                                     999************************8...55555.3333333335677**************98433333..35667 PP

                            GRAS 228 Lklvksl..........sPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpres.eerikvErellgr 292
                                     L+l k+l          +  ++ + + +a+    n++sF   f e++ +y al++s+e ++p++  e+r+++E  ++++
  FANhyb_rscf00000792.1.g00004.1 384 LRLAKELlassgnskttKRGIIAFGDGDASEnleNHSSFSSFFNETIVHYQALLESMELNFPSHLaEARMVMECIFIAP 462
                                     7776665222221111155699999999654237899*************************987799*********** PP

                            GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsv 370
                                      +++    ++   r+++  ++ W      +G++  +ls+ + ++a+ ++    s g r+e ++ +++vl W++ pLv v
  FANhyb_rscf00000792.1.g00004.1 463 FVSSQTWFQKWTERKDCH-VQPW------FGLEGRRLSKANLTEAREIVGDERSYGIRIEgQNANEMVLEWRGTPLVRV 534
                                     999999988887555544.7888......8******************************777999************* PP

                            GRAS 371 SaWr 374
                                     S W+
  FANhyb_rscf00000792.1.g00004.1 535 STWE 538
                                     ***5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.648138541IPR005202Transcription factor GRAS
PfamPF035141.2E-41165538IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MEYSPFLERS WSFQNLIHSS FDQSAEFINM DHTPIDSSDF SSLFINSNEF SEISEITSYP  60
FANLFTAADD LIQVTSQGEE VSMDLEGCEA DLMIEGFLCN SLEGSEGSFP SQQASSHQFS  120
TEGNDVWSPD SIVTSEASSM DSTSIQSPLT FPREEERIEN ELSIRHLLQA FAEAMEYGQK  180
ELEEVILSSM SEKVSPIGES LERLAFNLCQ EVVDEHQQGG DYLKQESLKN FEAALKVFIQ  240
NFPYARFAHY VANSAILEAI PVEAETVHIV DFDMGEGIQL SQIIEALAQR FKTLKVTAIK  300
WEEEESDCAP PHWTFEETKK QLQNHARSFG LNLKLEQVAM EDLVTEIKKA NKRGGGKEFL  360
AFNCMNSLPH MRRKRSRRHV MEYLRLAKEL LASSGNSKTT KRGIIAFGDG DASENLENHS  420
SFSSFFNETI VHYQALLESM ELNFPSHLAE ARMVMECIFI APFVSSQTWF QKWTERKDCH  480
VQPWFGLEGR RLSKANLTEA REIVGDERSY GIRIEGQNAN EMVLEWRGTP LVRVSTWENQ  540
S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305116.20.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P6R8W60.0A0A2P6R8W6_ROSCH; Putative transcription factor GRAS family
STRINGXP_004305116.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-17GRAS family protein