PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000792.1.g00005.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 503aa MW: 57049 Da PI: 4.2922

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000792.1.g00005.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	128.3	8.5e-40	192	501	74	374
GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspe 151 ++ a+klf++ +P+ kf+h +aN aIlea+ ++ e+vHi+Dfd+++G+Q +++aLa+R + l++T+++ ++ FANhyb_rscf00000792.1.g00005.1 192 YKNFEPAFKLFYQNFPYGKFAHYVANTAILEAIPEDtEMVHIVDFDMGEGMQLSQMIEALAQRLKT---LKVTAIKWED 267 455556889**********************88879*********************765...**9988 PP GRAS 152 sg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsles 222 ++ + + e +++L+k+A+++g++++ + + +l+dl + e++ + +E +a n++++l ++ ++ ++s FANhyb_rscf00000792.1.g00005.1 268 EEsdcaLQGTFGERKKQLQKLARSFGLSLKVEEV---ALDDL-VAEIKKTRkrglKEFVAFNCMVSLPHMRRR--RSRS 340 8855555556667799************97...67777.444433333679********999743..3333 PP GRAS 223 erdevLklvksl..........sPkvvvvveqe.adh..nsesFlerflealeyysalfdsleaklpres.eerikvEr 287 e+L+l k+l + +v++ + e ++ n+ +F f l +y al +s+e+++p++ e+r+++E+ FANhyb_rscf00000792.1.g00005.1 341 LVIEFLRLAKDLlatsgnyktgNTGIVTFGDGEaFERlgNQLDFSSFFDGNLVHYQALSESIESNFPSHLaEARMVLEN 419 4569999999885555544444667****534358999*********************98779*** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdr 365 +l++ +++ ++ + +++ +++ W e ++ +ls+++ +ak ++ +s g ++ ++ ++++l W+++ FANhyb_rscf00000792.1.g00005.1 420 IFLAPYVSSQTWFQNWSEMKENSHVQPWLE------LEGRKLSTENLLEAKEIVGDESSYGIKIGgKNGNEMTLEWREN 492 ************99999999999965......78899*************999956677888*** PP GRAS 366 pLvsvSaWr 374 pLv vS W+ FANhyb_rscf00000792.1.g00005.1 493 PLVRVSTWE 501 ******5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.375	92	503	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-37	192	501	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MEYPSWPFHN MVNSSFDQSD LMNIVDSQIG SSDFSSLLLN SDVFSDLSET CSYPLATVFW 60 GDDLIQVSSQ LEEFPMNLEE IDHDLMIEGL YGNFLENSRG TLLSQEVSTQ FSIEGDCLSD 120 SLVTCEVSSM DSTSILTSQT APPELVDIDN ESGIRHLLKA YSESMENGQK ELEEKAVDDQ 180 QGDVDYLKQQ SYKNFEPAFK LFYQNFPYGK FAHYVANTAI LEAIPEDTEM VHIVDFDMGE 240 GMQLSQMIEA LAQRLKTLKV TAIKWEDEES DCALQGTFGE RKKQLQKLAR SFGLSLKVEE 300 VALDDLVAEI KKTRKRGLKE FVAFNCMVSL PHMRRRRSRS LVIEFLRLAK DLLATSGNYK 360 TGNTGIVTFG DGEAFERLGN QLDFSSFFDG NLVHYQALSE SIESNFPSHL AEARMVLENI 420 FLAPYVSSQT WFQNWSEMKE NSHVQPWLEL EGRKLSTENL LEAKEIVGDE SSYGIKIGGK 480 NGNEMTLEWR ENPLVRVSTW EKQ

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MEYPSWPFHN MVNSSFDQSD LMNIVDSQIG SSDFSSLLLN SDVFSDLSET CSYPLATVFW  60
GDDLIQVSSQ LEEFPMNLEE IDHDLMIEGL YGNFLENSRG TLLSQEVSTQ FSIEGDCLSD  120
SLVTCEVSSM DSTSILTSQT APPELVDIDN ESGIRHLLKA YSESMENGQK ELEEKAVDDQ  180
QGDVDYLKQQ SYKNFEPAFK LFYQNFPYGK FAHYVANTAI LEAIPEDTEM VHIVDFDMGE  240
GMQLSQMIEA LAQRLKTLKV TAIKWEDEES DCALQGTFGE RKKQLQKLAR SFGLSLKVEE  300
VALDDLVAEI KKTRKRGLKE FVAFNCMVSL PHMRRRRSRS LVIEFLRLAK DLLATSGNYK  360
TGNTGIVTFG DGEAFERLGN QLDFSSFFDG NLVHYQALSE SIESNFPSHL AEARMVLENI  420
FLAPYVSSQT WFQNWSEMKE NSHVQPWLEL EGRKLSTENL LEAKEIVGDE SSYGIKIGGK  480
NGNEMTLEWR ENPLVRVSTW EKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004305115.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A2P6R8W1	0.0	A0A2P6R8W1_ROSCH; Putative transcription factor GRAS family
STRING	XP_004305115.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4274	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	4e-20	GRAS family protein