PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000814.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family DBB
Protein Properties Length: 308aa    MW: 33909.9 Da    PI: 6.7198
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000814.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.4e-07443538
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                                     C+ +++ e++ fC+ ++  lC+ C    H+       H+
  FANhyb_rscf00000814.1.g00002.1  4 QCDVCNKDEASVFCTADEAALCDGCDHRVHHAnklaskHQ 43
                                    7******99******************9964446666676 PP
2zf-B_box25.52.7e-085793438
                        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                                    + C+ ++e ++ lfC++++  lC++C + +H+   Ht
  FANhyb_rscf00000814.1.g00002.1 57 PLCDICQERRAFLFCQQDRAILCRECDVPIHSAneHT 93
                                    68*****************************657765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.793147IPR000315B-box-type zinc finger
CDDcd000212.90E-6347No hitNo description
SMARTSM003366.4E-6447IPR000315B-box-type zinc finger
SMARTSM003366.2E-1454101IPR000315B-box-type zinc finger
PROSITE profilePS501199.54254101IPR000315B-box-type zinc finger
PfamPF006436.0E-75793IPR000315B-box-type zinc finger
CDDcd000219.19E-1157100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKIQCDVCNK DEASVFCTAD EAALCDGCDH RVHHANKLAS KHQRFSLIHP SSSKLSPLCD  60
ICQERRAFLF CQQDRAILCR ECDVPIHSAN EHTQKHNRFL FTGVKLSATS TVYTSTESAA  120
VTDPKPQPLI NKQQPVPVSS SISNPFSVPK ISTTTTTTSV PKISTSTKSG ASLIPNDGVG  180
SMSSISEYLT ETLPGWHVED LLDISSNHPF GFCKADNEAL PFFDDDIQSN LTSFSSENLG  240
IWVPQAPNPS LQHSQTGFKE TTKEAATNMN MTKANYNSNY RSMWNVDDSF TVPQISPPSV  300
GSKRFRPF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291815.10.0PREDICTED: B-box zinc finger protein 21
SwissprotQ9LQZ71e-89BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A2P6PZ030.0A0A2P6PZ03_ROSCH; Putative transcription factor interactor and regulator Znf-B family
STRINGXP_004291815.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.15e-89salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]