PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000831.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LFY
Protein Properties Length: 243aa    MW: 27103.8 Da    PI: 9.8436
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000831.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY375.67.5e-11558226218386
                         FLO_LFY 218 egsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasy 296
                                     ++++ +g+erqrehPf+vte+gevargkknGLDYLf+LyeqC++fL+qvq+iakerGekcPtkvtnqvfryak+ ga+y
  FANhyb_rscf00000831.1.g00001.1  58 MRGTGGGRERQREHPFVVTEAGEVARGKKNGLDYLFHLYEQCHQFLTQVQNIAKERGEKCPTKVTNQVFRYAKEEGANY 136
                                     44566789*********************************************************************** PP

                         FLO_LFY 297 inkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLr 375
                                     inkPkmrhYvhCYalhcLdee s alrr+ k rgen+Gawrqacy+p+v+iaa qgwdida+f+ahprLs+WYvPtkLr
  FANhyb_rscf00000831.1.g00001.1 137 INKPKMRHYVHCYALHCLDEERSIALRRECKLRGENIGAWRQACYRPVVEIAAGQGWDIDAIFSAHPRLSVWYVPTKLR 215
                                     ******************************************************************************* PP

                         FLO_LFY 376 qLChlerskas 386
                                     qLCh+er++a+
  FANhyb_rscf00000831.1.g00001.1 216 QLCHAERNNAA 226
                                     ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.3E-10846226IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MILMHVMGWL DRAVGGAGAT REGDGGEWRR SSMGRGMKRT MTRINGGGGE RPGRALGMRG  60
TGGGRERQRE HPFVVTEAGE VARGKKNGLD YLFHLYEQCH QFLTQVQNIA KERGEKCPTK  120
VTNQVFRYAK EEGANYINKP KMRHYVHCYA LHCLDEERSI ALRRECKLRG ENIGAWRQAC  180
YRPVVEIAAG QGWDIDAIFS AHPRLSVWYV PTKLRQLCHA ERNNAAASSS ASGGSGTADP  240
LPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-100642392191PROTEIN LEAFY
2vy2_A1e-100642392191PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300371.11e-133PREDICTED: floricaula/leafy homolog
SwissprotO485591e-102UNI_PEA; Protein UNIFOLIATA
TrEMBLH6V2T81e-129H6V2T8_FRAAN; LEAFY like protein 3
STRINGXP_004300371.11e-133(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.12e-95floral meristem identity control protein LEAFY (LFY)