PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000831.1.g00009.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 318aa MW: 36632.6 Da PI: 7.0932

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000831.1.g00009.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69	1.2e-21	64	150	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 fY +YA+ +GF vr+ +s++s++++e+++++f C+++g+ +e + +e+r r + r +Cka++ v + k+g ++v+ FANhyb_rscf00000831.1.g00009.1 64 FYTKYASAAGFVVRIGSSRRSRKTNEFIRKEFFCNRQGNGPRELTG--NEKRIRGVVREDCKARMIVGRVKTGGFVVNI 140 9***********************************99998877..99999********************** PP FAR1 81 leleHnHela 90 +++ HnH+++ FANhyb_rscf00000831.1.g00009.1 141 FDECHNHPMT 150 *****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-19	64	150	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-12	271	318	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MAANDMVLCV EMETDEMDVP LDLETLPIRA IPPSQDHVFY PQVSNELKPF KGQEFKTWEE 60 AHVFYTKYAS AAGFVVRIGS SRRSRKTNEF IRKEFFCNRQ GNGPRELTGN EKRIRGVVRE 120 DCKARMIVGR VKTGGFVVNI FDECHNHPMT SPEMRHLVKS NRGHTKAQKL LWQQLSMVNI 180 PTHRQFDILG VQAGGFQYIG CTQQDLYNLE RDKRKETKGH DGEMLHDYFQ LEQEKDSGFY 240 FTIKADAENK ITHCFWADAL SRQSYKVYGD VIIFDTTYQT NRYGLIFAPL MGINNHGQTI 300 VFGAAFLSDE TADSFVWL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024172277.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P6QU81	1e-100	A0A2P6QU81_ROSCH; Putative transcription factor FAR family
STRING	XP_004304830.1	1e-152	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14110	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-48	FAR1-related sequence 5