PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000848.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 583aa    MW: 64403.5 Da    PI: 8.7487
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000848.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31321377259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     dD ynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers   ++++ei+Y+ +Hnhe
  FANhyb_rscf00000848.1.g00005.1 321 DDRYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERSP-TGEITEIIYKAQHNHE 377
                                     8****************************************.9**************8 PP
2WRKY106.21.7e-33469527159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  FANhyb_rscf00000848.1.g00005.1 469 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYTGCNVRKHVERAANDPKAVITTYEGKHNHD 527
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-27312379IPR003657WRKY domain
PROSITE profilePS5081123.089315379IPR003657WRKY domain
SuperFamilySSF1182902.35E-24316379IPR003657WRKY domain
SMARTSM007748.8E-34320378IPR003657WRKY domain
PfamPF031061.3E-23321377IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-37454529IPR003657WRKY domain
SuperFamilySSF1182905.62E-30461529IPR003657WRKY domain
PROSITE profilePS5081137.987464529IPR003657WRKY domain
SMARTSM007749.0E-40469528IPR003657WRKY domain
PfamPF031062.0E-26470527IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MAAKHQDSIS APQPQRPVIS LPPRPSAEAL FGGGSGTSPG PMTLVSSFFS DSGYDSDFRS  60
FSQLLAGAMG SPLAQVRPIM FGQNQNPVRN EGAGSENGGE KSSGFKQSRP MNLMVTHSPL  120
FTVPPGLSPS GLLNSPAGVK GAVFVAVEWL LYFWGEDKIW VVVVFACFDV CGFINVEKLG  180
SWMLVILELW VFNVWHSMAM LPDTGFTVRV FFMNCIDLKS HFTIDDGRGY SPFGISHQQA  240
LAHVTALAQS NLQMQAEYQS SLLAAPIESQ PSNASSIPNE ASQQQTTPST SELGSSMVQT  300
SEASHSDRKY PSSHATDKPA DDRYNWRKYG QKQVKGSEYP RSYYKCTHLN CPVKKKVERS  360
PTGEITEIIY KAQHNHEPPQ PNKRVKDGGG QNGHMDSQPK LENGLQRRVG DSNKSLKTWV  420
METREEGDVD EPNPKRRNID GVASEVALPH KTVTEPKIIV QTRSEVDLLD DGYRWRKYGQ  480
KVVKGNPHPR SYYKCTYTGC NVRKHVERAA NDPKAVITTY EGKHNHDVPA ARNSSHNIAN  540
NASQFKAPTV VAAEKHPLLK GREFGNNDQR PVVLQLKEEQ IAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-39321530878Probable WRKY transcription factor 4
2lex_A8e-39321530878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304267.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-102WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2P6S4790.0A0A2P6S479_ROSCH; Putative transcription factor WRKY family
STRINGXP_004304267.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-105WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]