PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000855.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YA
Protein Properties Length: 362aa    MW: 39401.9 Da    PI: 9.8387
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000855.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.4e-32163219158
                       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                     +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF
  FANhyb_rscf00000855.1.g00003.1 163 EEPVYVNAKQYHGILRRRQSRAKAELERKL-IKVRKPYLHESRHQHALRRARGCGGRF 219
                                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.8E-37161222IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.482162222IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.9E-27164219IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-24165187IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860167187IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.0E-24196219IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMPAKSKDED PQLKPGAQIV LQSTIQPWWH GVGNSFSFGE SAVASSLAER GNGVVMNGAM  60
QSHSSNFNKD VQTTIGSQSD GNSGRENQQM KSTSSAAAPK LGEHLDANSQ MELVGHSIVL  120
TSYPYPDPQY GGMLTHYGPR AMVHPQFYGL HHGRMPLPLE MEEEPVYVNA KQYHGILRRR  180
QSRAKAELER KLIKVRKPYL HESRHQHALR RARGCGGRFL NTKKQDGSDA NSSLEKSINL  240
DANFSPKSAK SGFQCFPNDG NGNFVSSNVQ QEGSGSWFRT LNNHTLTHGN GNGHGPSSAY  300
RTTFGNGTKG VFLGEPKETM QVNGSSHGAI HSVAEGVHFP AWKNPSCAMS KSGNSFLALV  360
TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20163226265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468828.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_011468829.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X1
TrEMBLA0A2P6S7K80.0A0A2P6S7K8_ROSCH; Putative transcription factor Hap2/NF-YA family
STRINGXP_004306538.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-37nuclear factor Y, subunit A7