PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000888.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 382aa    MW: 43052.9 Da    PI: 5.8373
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000888.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.5e-28958150
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                    krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  FANhyb_rscf00000888.1.g00003.1  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                                    79********************************************9997 PP
2K-box30.12e-11153223979
                           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                                     + +++ e+ qqe+  L++++++ ++++R +  + L+  s+ eL++ eq+Le+ l+++ ++K+ ll +q++ 
  FANhyb_rscf00000888.1.g00003.1 153 AVSSEIEEIQQEIGGLQQQLQMAEEQIRIYEPDPLKITSMAELESSEQRLENTLSRVMQRKEYLLSNQLSS 223
                                     5577899*************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.899161IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-28284IPR002100Transcription factor, MADS-box
CDDcd002655.85E-35271No hitNo description
PRINTSPR004045.0E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-7156224IPR002487Transcription factor, K-box
PROSITE profilePS512976.966158243IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRNALYNSFR QACFAHPCRR IEDVFTRYIN LPDQEREHAI IFPDHNRHPY ASVPFSKIIP  120
SDDLQNKEYL LRTLQQLRSE NDIALQLANS PTAVSSEIEE IQQEIGGLQQ QLQMAEEQIR  180
IYEPDPLKIT SMAELESSEQ RLENTLSRVM QRKEYLLSNQ LSSFDSSGIQ QVLPGSFENE  240
VAGWLANGGH NHTQIYDASA PLDHQLRNLS SSLYDPFSQG TSSNGGADPS SMGECHVSVT  300
NGSDGELPPW PQPYTSSGHH SNLMQPSLMP QYQQAIVSSN MPEIIPHEQV DIPVSSSNVQ  360
AYNDGADNYH DHNNKVPQLN GH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-16185185Myocyte-specific enhancer factor 2B
1tqe_Q1e-16185185Myocyte-specific enhancer factor 2B
1tqe_R1e-16185185Myocyte-specific enhancer factor 2B
1tqe_S1e-16185185Myocyte-specific enhancer factor 2B
6c9l_A1e-16185185Myocyte-specific enhancer factor 2B
6c9l_B1e-16185185Myocyte-specific enhancer factor 2B
6c9l_C1e-16185185Myocyte-specific enhancer factor 2B
6c9l_D1e-16185185Myocyte-specific enhancer factor 2B
6c9l_E1e-16185185Myocyte-specific enhancer factor 2B
6c9l_F1e-16185185Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465524.10.0PREDICTED: MADS-box transcription factor 5 isoform X3
SwissprotQ9LM461e-115AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A2P6PHY10.0A0A2P6PHY1_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004300656.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-108AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]