PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000897.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 277aa MW: 28749.4 Da PI: 4.5854

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000897.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23.2	1.8e-07	189	211	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+++ +L++Hi H FANhyb_rscf00000897.1.g00003.1 189 YPCTVCGKTFPNPRSLTSHIGFH 211 99*****************9666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.85E-5	187	214	No hit	No description
PROSITE profile	PS50157	11.261	189	216	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.001	189	211	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.1E-4	189	211	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	191	211	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGLGGSGAKY VGAKSNLWGD NYVYGSVASS GSGESLFGAK DLLSNVGKNA MKKEQGNPSS 60 KKEKSSSASR SVPGDKRNRD SVQDDENGDG SRVTKNMSSV WGARDQFMRL GGSDAKYDAK 120 SSLGCIASRM SSVAIGGFGS GEGDASLYGA FKSNAGVKIV GSGCGAKDGV MSNVSGQVGG 180 ASWSVSEIYP CTVCGKTFPN PRSLTSHIGF HARQGTMEED DSIIKSMEAL MGIKSLPSNV 240 ESIQATWSEE PFLEDTGEAL PEDNGGEDNE AGEDDEN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34274	2	2