PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000921.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 975aa    MW: 109345 Da    PI: 8.8265
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000921.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.8e-16800847148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg+WT  Ed ll+++++ +G g+Wk+++++ g+ R++k+c++rw +yl
  FANhyb_rscf00000921.1.g00001.1 800 RGPWTRREDTLLIQYIQSHGEGHWKSVPKKAGLLRCGKSCRLRWINYL 847
                                     89******************************99************97 PP
2Myb_DNA-binding49.87.6e-16853897147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     rg+ T++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w++ 
  FANhyb_rscf00000921.1.g00001.1 853 RGNITPDEEDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 897
                                     7999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.101.0E-53244320IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-7257302IPR001680WD40 repeat
PfamPF004001.2E-5269302IPR001680WD40 repeat
SuperFamilySSF509789.01E-50269305IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.853270311IPR001680WD40 repeat
PROSITE profilePS5029416.928270455IPR017986WD40-repeat-containing domain
PRINTSPR003204.1E-6289303IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.130.10.101.0E-53364592IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.3E-10366404IPR001680WD40 repeat
SuperFamilySSF509789.01E-50367577IPR017986WD40-repeat-containing domain
PfamPF004001.3E-7368403IPR001680WD40 repeat
PROSITE profilePS5008212.614373413IPR001680WD40 repeat
PRINTSPR003204.1E-6391405IPR020472G-protein beta WD-40 repeat
SMARTSM003201.2E-9407446IPR001680WD40 repeat
PfamPF004001.6E-5409445IPR001680WD40 repeat
PROSITE profilePS5008213.182413447IPR001680WD40 repeat
PRINTSPR003204.1E-6433447IPR020472G-protein beta WD-40 repeat
SMARTSM00320180448487IPR001680WD40 repeat
SMARTSM003204.6502538IPR001680WD40 repeat
PROSITE profilePS502949.942542583IPR017986WD40-repeat-containing domain
SMARTSM0032011544574IPR001680WD40 repeat
PROSITE profilePS5008211.21553583IPR001680WD40 repeat
PfamPF004000.12554574IPR001680WD40 repeat
SuperFamilySSF509789.01E-50694726IPR017986WD40-repeat-containing domain
Gene3DG3DSA:1.10.10.603.1E-23791850IPR009057Homeodomain-like
PROSITE profilePS5129416.986795847IPR017930Myb domain
SuperFamilySSF466892.19E-28798894IPR009057Homeodomain-like
SMARTSM007173.4E-13799849IPR001005SANT/Myb domain
PfamPF002491.4E-14800847IPR001005SANT/Myb domain
CDDcd001673.76E-10802847No hitNo description
PROSITE profilePS5129425.199848902IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-24851902IPR009057Homeodomain-like
SMARTSM007171.5E-15852900IPR001005SANT/Myb domain
PfamPF002494.3E-14853897IPR001005SANT/Myb domain
CDDcd001671.06E-10857898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
MGSYSEECED QFYDTREDLS SVSDWGADCC EDCSPIASVF SRYECWSKNP ESVHERRHRF  60
LKWMGLDLDR NLSMTEESDD GFFVDRSRTG IDRMKEDSGV VLRSSGFEEG CCSNQCTLSS  120
LSSEVRVSLG NALDENFEFP TRKLNDRRDF VVDELRGDGI LGKFRGLRLN QLVSAREIHS  180
TRAPAPSPSI QQLLQREVEN ARYLLDAKKT AKRGWLKKLR IGMCVADKPG AALSPISLKA  240
ATRTGMQRVQ VQSSKKRSKE LSSLYGGQNF SAHKGSILSM KFSLDGQYLA SAGQDGIVRV  300
WKVIEDERID RFDIANDPSS LYFKMNPFSK IGSQVVDKEK QSSAKKLGGS SDSACVIFPP  360
KIFRLTEKPL HEFRGHSGDV LDLSWSKNGF LLSSSVDKTV RLWQVGCDRC LRVFSHNNYV  420
TCVDFNPLDD NYFISGSIDG KVRIWEIIRC LVVDYIDVRE IVTAVSYCPD GKGGIVGFVT  480
GNCCFFNIID DHLKLDAQIC TQGKKKSVGK RITGFQFSPS NPRKVMVTSA DSVIRVISGT  540
KAYEVEEAMF LSSFTSDGNH IVSASEDSSV HIWNYNSQET SSSRSKNIRS CESFVSHNSM  600
IAIPWNGVND LPAMLPSPAF IGDAQGRSSL DSPLKLLNFD ERVQQKMHLS SPDCFSLGRG  660
FLLESLPKGT PTWPEEKLVN SSPVPPVPVS PTMSRSEYRF LKNACQSLSS SSHMWGLVIV  720
TAGWDGRHAG CNYSSRFNCS LTKVVNNSGW GIAFVLYPFI LYKSPDLVRS HIHLVLSYRF  780
SDVVKEKGRT PCCSKEGLQR GPWTRREDTL LIQYIQSHGE GHWKSVPKKA GLLRCGKSCR  840
LRWINYLRPD IKRGNITPDE EDLIVRLHSL LGNRWSLIAG RLPGRTDNEI KNYWNTNLSK  900
RLKNSGSTTR GASKPLNKDD QGSAAKVKVY QPKGFRVSAN SMLAQLGHHD AEVSNDLHDH  960
NHFWRCFGLR KCGRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-2579890225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300485.10.0PREDICTED: WD repeat-containing protein 3
RefseqXP_011465363.10.0PREDICTED: WD repeat-containing protein 3
RefseqXP_011465364.10.0PREDICTED: WD repeat-containing protein 3
TrEMBLA0A2P6P4050.0A0A2P6P405_ROSCH; Putative transcription factor WD40-like family
STRINGXP_004300485.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-58myb domain protein 5