PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000932.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GeBP
Protein Properties Length: 391aa    MW: 45100 Da    PI: 5.0926
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000932.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57375.21.1e-23103197397
                          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkeps 79 
                                      +r+ws+eDe+ lL+ ++d++++      ++   fy+ v+ + + +++k+ l eK+ rLKkK+++ vkk   ++g e++
  FANhyb_rscf00000932.1.g00003.1 103 RKRVWSKEDELELLKNFLDYRTRPR--TANEAPSFYDEVNPKFKEQYTKRKLAEKLGRLKKKYRNVVKKmmNNNGTEFR 179
                                     68******************77766..568999************************************88899***** PP

                          DUF573  80 fskehdqkifelskkiWg 97 
                                     f+++hd+ if++s++iW 
  FANhyb_rscf00000932.1.g00003.1 180 FRNPHDSAIFDISHRIWA 197
                                     *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.6E-25104196IPR007592Protein of unknown function DUF573
PROSITE profilePS5090311.772293344IPR024934Rubredoxin-like domain
PRINTSPR001633.6E-6295311IPR024935Rubredoxin domain
Gene3DG3DSA:2.20.28.103.1E-19297345IPR004039Rubredoxin-type fold
PfamPF003011.0E-15299341IPR024935Rubredoxin domain
SuperFamilySSF578024.21E-17300358No hitNo description
CDDcd007304.27E-17301342IPR024935Rubredoxin domain
PRINTSPR001633.6E-6325341IPR024935Rubredoxin domain
PROSITE patternPS002020325335IPR018527Rubredoxin, iron-binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010207Biological Processphotosystem II assembly
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0005506Molecular Functioniron ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MPWPLLKWIM YTSSSSSSSS EDFDEDEEEG INKKENEHRR ESNKSGEQNN DEDSDDDDFS  60
YEPHEEETSN SSDYTFTIDE PRRKRRRMDN KEFSPNVTSF KRRKRVWSKE DELELLKNFL  120
DYRTRPRTAN EAPSFYDEVN PKFKEQYTKR KLAEKLGRLK KKYRNVVKKM MNNNGTEFRF  180
RNPHDSAIFD ISHRIWAESP LYNIQEKNVV VDSHDVGSSK TSFDGKHGDD EGNTNVQEMI  240
IGLAMNPIPL SLSNYGGRGG DVANEKWREQ QILELEAYSK RLELVQQQVK AALDDLRSKS  300
CGYKYDEAVG DPSYPLPPGM QFEKLPEDWR CPTCGAAQSF FVSKSVEIAG FAENQQFGLG  360
GNSLTSGQKA LLIFGSLFLF FALFLSGYFL Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18286RKRRR
284104RRRMDNKEFSPNVTSFKRRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468357.10.0PREDICTED: uncharacterized protein LOC105352569
TrEMBLA0A2P6R6801e-175A0A2P6R680_ROSCH; Putative transcription factor GeBP family
STRINGEMJ091621e-64(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1067322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-22DNA-binding storekeeper protein-related transcriptional regulator