PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000955.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 184aa MW: 20857.7 Da PI: 8.323

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000955.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.7	3.2e-07	79	146	14	88
FAR1 14 vrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 v++++sk + + + C + g +++ e+++r++++ ++C k+ +k+ +g+w+v+ + l HnH+ FANhyb_rscf00000955.1.g00001.1 79 VVIKRSKPN------RNVVMGCDRGGCYRTRIAV-ENKKRNSSSRLINCPFKILGRKKGEGVWKVEMITLLHNHK 146 444433333......4566788888888888777.78888999999****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-5	76	146	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEEEPLNDAE LQKVASDNME EELQFDHSLN DIEGLPVGGN EEIFDVSDGF LSLSTKVYDN 60 RDDLVSDVRK IGFSQGYVVV IKRSKPNRNV VMGCDRGGCY RTRIAVENKK RNSSSRLINC 120 PFKILGRKKG EGVWKVEMIT LLHNHKPSTD MAGHPYCRRF SKEEALQVKQ MNRAGVKPRQ 180 ILSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011462913.1	1e-128	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011462914.1	1e-128	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P6QP23	3e-75	A0A2P6QP23_ROSCH; Putative transcription factor interactor and regulator CCHC(Zn) family
STRING	XP_008235823.1	7e-52	(Prunus mume)
STRING	XP_008245449.1	8e-53	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13278	3	4