PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000967.1.g00007.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 305aa MW: 33334.2 Da PI: 9.41

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000967.1.g00007.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	78.4	1.2e-24	30	105	25	100
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++p++ anvhk+FGasnv k+l++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q++ +l +++e FANhyb_rscf00000967.1.g00007.1 30 TSPRNSANVHKVFGASNVAKILNELSAPQREDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQLDLYNARKE 105 5678899************************************************************999888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.801	4	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-23	31	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MKLTQANTPA SFSGGNAPRS VCSRRTSRRT SPRNSANVHK VFGASNVAKI LNELSAPQRE 60 DAVNSLAYEA EARLRDPVYG CVGLISILQQ RLKQVQLDLY NARKELAAYM GPQAMLSILQ 120 PASYMGPQQI QGGNAGTSSA VVPYNMSPMM GIPTGGGSSG QLMVREQQQQ QQMFEAQQLL 180 AAREQQEMLR SFEQNKQSQA GHHQLRFNSG FDSVTGTGLS QMSPTSSAAA NNANISPALA 240 LGFDHSPYQI QQQQQEHHHH HLQLQALLQS QQQQSQQPQQ QQPPQLLPHK VEGEEGRSRS 300 VGPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-27	32	109	37	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-27	32	109	37	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288064.1	1e-134	PREDICTED: LOB domain-containing protein 36
Swissprot	Q9FKZ3	1e-55	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2P6RN88	1e-119	A0A2P6RN88_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004288064.1	1e-134	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-52	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]