PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000968.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 599aa    MW: 66600.2 Da    PI: 7.2982
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000968.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.9e-103934301954
                                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  FANhyb_rscf00000968.1.g00006.1 393 FEHflHPYPTDTDKISLAKQTGLSRSQVSNWFINARVR 430
                                     554459******************************87 PP
2BELL110.21.2e-35256325372
                            BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                      e ++kk++L+s+l+eV++rYkqy++q+q+v+ sFe vaglg+a+pY++lA ka++rhF+cLk+ai++q+
  FANhyb_rscf00000968.1.g00006.1 256 GETRRKKSRLISMLDEVYRRYKQYYHQMQAVVTSFEYVAGLGNAAPYANLAIKAMTRHFKCLKNAITDQL 325
                                     5889***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-52188323IPR006563POX domain
PfamPF075264.4E-42193322IPR006563POX domain
PROSITE profilePS5007112.179371434IPR001356Homeobox domain
SMARTSM003899.6E-10374438IPR001356Homeobox domain
CDDcd000866.27E-13374435No hitNo description
SuperFamilySSF466896.84E-17376441IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-27377438IPR009057Homeodomain-like
PfamPF059205.7E-19391430IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
PWLRVLSPTM FLNRAGEISS GSCRVQPHPV CVEPGPHHLH GCAAATAFYD PTSISLLSSS  60
DLLSCPKEES HVNLMPYMNS SQPSSSLHNF RPPYLDPQPS SFANSVQDIN SLNNLFLYPS  120
QQSHHHHHHQ LRGDFHNEQG LFRPEPLSLS LSSQPIEVHN LQRYGYSGIN DGGHGSRSPG  180
PTPLGPFTGY ASILKGSRFL KPAQQLLEEF CDVGNSSRDI YAAVSRTMTD ESSSFLDDPP  240
IESLDDPASV GGADGGETRR KKSRLISMLD EVYRRYKQYY HQMQAVVTSF EYVAGLGNAA  300
PYANLAIKAM TRHFKCLKNA ITDQLQYSRS SRDSITYVSC DKDEAIPVLH NTTRGMYGHR  360
SFQSTEFCEP QPVWRPQRGL PERAVTVLRS WLFEHFLHPY PTDTDKISLA KQTGLSRSQV  420
SNWFINARVR VWKPMVEEIH MLETRQAHRN ADRSDDHHDH LPSTNSVASE NPSTSTYRAR  480
DTASKRPRSE FPDVTVASTH QQLNMSYNNL PNHLHHVGQV GGSMAGGSTS GVSLTLGLHH  540
QNNGIGLSEP PYAIINTPQR FGLGLEGSSD GYTMGGFDAQ NRHFGRDVMG GQLLRDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A8e-16380438563Homeobox protein Meis2
4xrm_B8e-16380438563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302698.10.0PREDICTED: BEL1-like homeodomain protein 9 isoform X1
SwissprotQ9LZM81e-108BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2P6R9J60.0A0A2P6R9J6_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004302698.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.15e-98TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]