PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000991.1.g00009.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 270aa    MW: 30186.8 Da    PI: 8.2837
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000991.1.g00009.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+W++eEd  l ++ +++G+  +W t +++ g++R++k+c++rw++yl
  FANhyb_rscf00000991.1.g00009.1 14 RGPWSPEEDATLRNYLNEHGTAgNWITLPSKAGLNRCGKSCRLRWLNYL 62
                                    89******************99*************************97 PP
2Myb_DNA-binding45.51.7e-1468111146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     rg++T+eEd  +  +++  G++ W+ Ia++++ gRt++++k++w++
  FANhyb_rscf00000991.1.g00009.1  68 RGSFTEEEDNVICTLFRSIGSR-WSVIASKLP-GRTDNDVKNHWNT 111
                                     89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.697962IPR017930Myb domain
SuperFamilySSF466891.29E-2612109IPR009057Homeodomain-like
SMARTSM007172.0E-111364IPR001005SANT/Myb domain
PfamPF002492.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-241569IPR009057Homeodomain-like
CDDcd001672.62E-81662No hitNo description
PROSITE profilePS5129423.64963117IPR017930Myb domain
SMARTSM007172.7E-1367115IPR001005SANT/Myb domain
PfamPF002497.9E-1368111IPR001005SANT/Myb domain
CDDcd001671.90E-970113No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRAPCCDKS KVKRGPWSPE EDATLRNYLN EHGTAGNWIT LPSKAGLNRC GKSCRLRWLN  60
YLRPDIKRGS FTEEEDNVIC TLFRSIGSRW SVIASKLPGR TDNDVKNHWN TKLKKKLLAV  120
AARKNIVSTR KSNITQFSSL VPPKIETPQG AETASSCLSG TLPYAANTIF VHSFDQPKQT  180
LEPWCSHFSG SKPMEVSDFG STSESNSFSI PQSHQEFSSL PSSSSLAQLD QYHYSLWSGF  240
EDFNINSDFL MNFEFETPPG DHFLPGGFGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288907.10.0PREDICTED: transcription factor RAX1-like
TrEMBLA0A2P6RJZ61e-146A0A2P6RJZ6_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004288907.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-62MYB family protein