PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001001.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 236aa    MW: 25718.9 Da    PI: 7.7963
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001001.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.33.1e-39491501101
                          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                     +C aCk+lrrkC +dC++ap+f ++q +++fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA+ar++dPvyG+v+
  FANhyb_rscf00001001.1.g00004.1  49 PCGACKFLRRKCINDCIFAPHFGSDQaAARFAAVHKVFGASNVSKLLLHLPLNRRHDAVVTVSYEAQARLSDPVYGCVS 127
                                     7**********************99978*************************************************** PP

                          DUF260  79 vilklqqqleqlkaelallkeel 101
                                     +il+lqqq+++l++ela+++++l
  FANhyb_rscf00001001.1.g00004.1 128 TILALQQQVASLQTELAMVQTQL 150
                                     ******************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.13148150IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3849147IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MADQPQGNHR GTSGSCLRKA TSAGTGKQQQ RTELDRYHHK TCSTVASAPC GACKFLRRKC  60
INDCIFAPHF GSDQAAARFA AVHKVFGASN VSKLLLHLPL NRRHDAVVTV SYEAQARLSD  120
PVYGCVSTIL ALQQQVASLQ TELAMVQTQL INSRFAFANA IQSSQQQQQN MALLQPAYSN  180
NSSALTNLIN MSSFTSNIHD LAAETAPCSH ILEPLLLSRP TQDEEDDEHQ SQVPSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-38461568115LOB family transfactor Ramosa2.1
5ly0_B9e-38461568115LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309740.11e-161PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV31e-71LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2P6RHE81e-137A0A2P6RHE8_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004309740.11e-161(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-73LOB domain-containing protein 20