PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001009.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 203aa    MW: 23433.9 Da    PI: 9.14
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001009.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.3e-124841599
                                    -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                              B3 15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                                     l++p +f +++  ++   e   l+++  s   W++++   k +  ++l++GW+eF +++ + +g+ ++ ++dgr++f   
  FANhyb_rscf00001009.1.g00001.1  4 ELIIPQEFQKHIlnEL--LELALLKIKYFSHCAWNIRV--HKIGTNIYLKEGWREFLEDHSIGDGELLIVRYDGRMQF--S 78
                                    599*****96665433..3556899999999*******..999999********************************..9 PP

                                    EEEE-S CS
                              B3 94 vkvfrk 99
                                    +++f+k
  FANhyb_rscf00001009.1.g00001.1 79 IQIFDK 84
                                    999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.492185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-13485IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-9485IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-13485IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-73583No hitNo description
Gene3DG3DSA:2.40.330.102.4E-7135203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-8135203IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.797152203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MKTELIIPQE FQKHILNELL ELALLKIKYF SHCAWNIRVH KIGTNIYLKE GWREFLEDHS  60
IGDGELLIVR YDGRMQFSIQ IFDKNHIERI DFPDTKIQDE NLAFANDSAS VGNIPSCQSS  120
EFKEINKGEA AAFTNSEFPS FTVTIPDYCY GLRVPADFSR KHLTQGTYNL VKRSKGQKWK  180
VKVVRLCTSV KLSGGWAKFR RAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292455.11e-147PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A2P6PMV82e-66A0A2P6PMV8_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004292455.11e-147(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3430622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-10B3 family protein