PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001009.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 259aa    MW: 29856.2 Da    PI: 9.8842
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001009.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.8e-1711103199
                                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                     ffk+      ++++ l++p kf +++  +++  e+ tl l+ +s  sW v++  ++  g ++l++GW++F k+n L + 
  FANhyb_rscf00001009.1.g00002.1  11 FFKII--ITGFNTDDLRIPPKFRRHMlnELS--ETATLELRGSSKCSWIVQV--SQIEGDIYLKDGWQKFIKDNSLGDY 83 
                                     66766..66889999*******866665444..667999*************..999999******************* PP

                                     -EEEEEE-SSSEE..EEEEE-S CS
                              B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                     +f+vF++++ + f  ++ +f++
  FANhyb_rscf00001009.1.g00002.1  84 EFLVFRYERAMHF--TIDIFDE 103
                                     *******998999..9999886 PP
2B355.31.2e-171812571597
                                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                     ++++p +f ++h   +++   +++++++g++W+vk+   ++  ++ l++GW eF +an++k gD+++Fkl++r  ++lv
  FANhyb_rscf00001009.1.g00002.1 181 NVSVPTDFSKKHL--PQGYYSIVVKNSKGQKWKVKV--VRSCTSVKLSGGWAEFRRANQIKCGDICTFKLVER--KTLV 253
                                     5899*****9994..235568***************..9******************************9875..5558 PP

                                     EEEE CS
                              B3  94 vkvf 97 
                                     v+v+
  FANhyb_rscf00001009.1.g00002.1 254 VHVV 257
                                     8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-215106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-196106IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-149102No hitNo description
PROSITE profilePS5086311.8299104IPR003340B3 DNA binding domain
PfamPF023621.9E-1411103IPR003340B3 DNA binding domain
SMARTSM010192.7E-1111104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-18165257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-19165257IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.606167259IPR003340B3 DNA binding domain
CDDcd100171.59E-14169256No hitNo description
SMARTSM010192.8E-7171259IPR003340B3 DNA binding domain
PfamPF023628.5E-16180257IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MQRRASKEPT FFKIIITGFN TDDLRIPPKF RRHMLNELSE TATLELRGSS KCSWIVQVSQ  60
IEGDIYLKDG WQKFIKDNSL GDYEFLVFRY ERAMHFTIDI FDETGCMRNN FLKKSTGADN  120
TKRPRGRARK YNHSAAVENI RSCQSTELIE IKEEEIEEEA ATSHNSGFPS FASIMLNHLY  180
NVSVPTDFSK KHLPQGYYSI VVKNSKGQKW KVKVVRSCTS VKLSGGWAEF RRANQIKCGD  240
ICTFKLVERK TLVVHVVPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290347.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A2P6PMW21e-135A0A2P6PMW2_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004290347.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-19B3 family protein