PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001066.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 488aa MW: 55349.5 Da PI: 6.3353

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001066.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.7	3.1e-23	109	209	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt+ +v++Li a+ +++++ ++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++ FANhyb_rscf00001066.1.g00001.1 109 KWTDTMVRLLIMAVFYIGDEGISEGpdptgkkkngggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVN 187 7************998877654335666678899999************************************ PP trihelix 66 egekkr.tsessstcpyfdqle 86 ++ +k+ +++++++ +++++e FANhyb_rscf00001066.1.g00001.1 188 DILGKGtACKVVENQGLLEKME 209 ****5599999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.7E-22	107	234	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010629	Biological Process	negative regulation of gene expression
GO:1900037	Biological Process	regulation of cellular response to hypoxia
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MEGNGLGGGL FPEMRSGMLG LEMPLHQTQN PQNPQNPHHH MHQPQIVSYA HHEADHNHHP 60 QAEQSVKHGY PYATNPKQIT LSDEDEPGFG ADDSAGDNKR KISPWQRMKW TDTMVRLLIM 120 AVFYIGDEGI SEGPDPTGKK KNGGGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN 180 KRYKRVNDIL GKGTACKVVE NQGLLEKMEL SSKMKEEVKK LLNSKHLFFR EMCAYHNSCG 240 HGTVGAAGAS GAHNSSPEMA TDPSQVQLQQ QSQQQRCFHV SENAHVVANS GRSETEGSKM 300 LKAESGGEDE DEDYEDDDSE DDDDEEEEGV VEGGPRSQIG HVHEDGDEND HERAKRPRKG 360 SCFSGSSMKM LMQQLTSEVN GVIQDASKTP WEKKQWMKTR LIQLEEQQVS YRYQSFELEK 420 QRLKWVKYSS KKERDMERAK LENEGRRLEN ERMLLLVRQK ELELLDLHHQ HPQQNSSNKR 480 SDPSSLTG

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MEGNGLGGGL FPEMRSGMLG LEMPLHQTQN PQNPQNPHHH MHQPQIVSYA HHEADHNHHP  60
QAEQSVKHGY PYATNPKQIT LSDEDEPGFG ADDSAGDNKR KISPWQRMKW TDTMVRLLIM  120
AVFYIGDEGI SEGPDPTGKK KNGGGLLQKK GKWKSVSRAM MEKGFYVSPQ QCEDKFNDLN  180
KRYKRVNDIL GKGTACKVVE NQGLLEKMEL SSKMKEEVKK LLNSKHLFFR EMCAYHNSCG  240
HGTVGAAGAS GAHNSSPEMA TDPSQVQLQQ QSQQQRCFHV SENAHVVANS GRSETEGSKM  300
LKAESGGEDE DEDYEDDDSE DDDDEEEEGV VEGGPRSQIG HVHEDGDEND HERAKRPRKG  360
SCFSGSSMKM LMQQLTSEVN GVIQDASKTP WEKKQWMKTR LIQLEEQQVS YRYQSFELEK  420
QRLKWVKYSS KKERDMERAK LENEGRRLEN ERMLLLVRQK ELELLDLHHQ HPQQNSSNKR  480
SDPSSLTG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466806.1	0.0	PREDICTED: uncharacterized protein LOC101312168
TrEMBL	A0A2P6RBE1	0.0	A0A2P6RBE1_ROSCH; Putative transcription factor Trihelix family
STRING	XP_004303047.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4820	34	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-59	sequence-specific DNA binding transcription factors