PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001108.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 177aa    MW: 20500.9 Da    PI: 4.7074
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001108.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.83.3e-133710554128
                             NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                                     +++ewyf+++r +k+      +  t++gy  +t  d+++++ ++++vg k++L fy g r ++g +t+W +he+++
  FANhyb_rscf00001108.1.g00002.1  37 NDNEWYFYTTRTNKN------HYLTRNGYYLTTSMDEQIFR-NNKVVGFKRILRFYLGsRPETGIETEWSVHEFQA 105
                                     678******998864......347889**************.999***********885777899*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.6161135IPR003441NAC domain
SuperFamilySSF1019418.5E-236135IPR003441NAC domain
PfamPF023655.3E-147104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAAPPFPGLR FYQPTDDEII RNYLIPKILE ENVDHFNDNE WYFYTTRTNK NHYLTRNGYY  60
LTTSMDEQIF RNNKVVGFKR ILRFYLGSRP ETGIETEWSV HEFQANPGVF PAANLLGSVV  120
QEKLSSLVVC KILRTQEPSV NESEERDRDE GDSSGIDMEE LPSTSKNLKG TKLPQEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-12710417139Stress-induced transcription factor NAC1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306061.11e-122PREDICTED: NAC domain-containing protein 67-like
TrEMBLA0A2P6S3Z87e-38A0A2P6S3Z8_ROSCH; Putative transcription factor NAM family
STRINGXP_004306061.11e-121(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.15e-17NAC domain containing protein 100