PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001114.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 339aa    MW: 38348.9 Da    PI: 8.8177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001114.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.1e-141562241888
                                     --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                              B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                     +p  f ++ +++ ++   l+l+++s  sW+v +  +k+++ ++l++GW+eF ++n L + +f+vF+ ++ s
  FANhyb_rscf00001114.1.g00001.1 156 IPPAFRKHVSHELTSRAILKLKNSSESSWTVIV--SKTGRDVYLKDGWQEFLRDNSLGDSEFLVFRTSEAS 224
                                     788886444555557779***************..*******************************65444 PP
2B342.11.6e-132853384198
                                     TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                              B3  41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                     +   +++v+l    + ++++l++GW++F ++n+L++gD+++F+l++  e +++v++fr
  FANhyb_rscf00001114.1.g00001.1 285 RMVGKFTVTL--YTCTDTMMLSGGWSSFRNDNQLQVGDMCIFELVK--ENTMKVHIFR 338
                                     3337888888..999999*************************986..66689**998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.018144229IPR003340B3 DNA binding domain
PfamPF023621.3E-11155222IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-12155226IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-13155226IPR015300DNA-binding pseudobarrel domain
CDDcd100174.95E-9155219No hitNo description
PROSITE profilePS5086310.066156234IPR003340B3 DNA binding domain
SMARTSM010190.56250339IPR003340B3 DNA binding domain
PfamPF023622.7E-11261339IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-16270338IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-11275338No hitNo description
PROSITE profilePS5086310.193289339IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-13290338IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMRLYNGFLD ILKIQKFRRI VSYTGFYCFT AVLSYAYTSN TTRAGFSRGD QFYASYPAGT  60
ELLTDQAKLY KAALGNCFET EEWGPIEYCI MAKHFERQGK GPYAYHAQMS RRSCDSVYMN  120
VLYELADELL IHAAATFIAS CSGIDAILIV EMANRIPPAF RKHVSHELTS RAILKLKNSS  180
ESSWTVIVSK TGRDVYLKDG WQEFLRDNSL GDSEFLVFRT SEASTFPDSS ERPLARPPTG  240
NHRYESSAEA AKGLKSEGEH LPRLAAAAAF KSKFPCFTKV LKKSRMVGKF TVTLYTCTDT  300
MMLSGGWSSF RNDNQLQVGD MCIFELVKEN TMKVHIFRN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461740.11e-115PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A2P6QZ612e-82A0A2P6QZ61_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004296236.11e-116(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.15e-07B3 family protein