PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001143.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 503aa    MW: 56333.9 Da    PI: 8.2961
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001143.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001729123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    ++C+ Cg++F +   L  H+r+H
  FANhyb_rscf00001143.1.g00002.1  7 HVCKFCGQRFVSGKVLGGHMRSH 29
                                    79*******************99 PP
2zf-C2H216.13.2e-0583103323
                                     ETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                     C+ Cgk F +k +L  H+r H
  FANhyb_rscf00001143.1.g00002.1  83 CKVCGKAFESKNSLFGHMRHH 103
                                     *******************99 PP
3zf-C2H214.88.1e-05113134223
                                     EETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                     +C dCgk F +   L +H r+H
  FANhyb_rscf00001143.1.g00002.1 113 RCRDCGKGFESLKALGVHRRVH 134
                                     7*******************99 PP
4zf-C2H2157.2e-05339361123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     + C +C ++Fs++  L  H+r+H
  FANhyb_rscf00001143.1.g00002.1 339 HMCRICRRVFSSPQALGGHQRVH 361
                                     68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.58E-5536No hitNo description
PROSITE profilePS5015710.99734IPR007087Zinc finger, C2H2
SMARTSM003550.052729IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-6729IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.55281108IPR007087Zinc finger, C2H2
SMARTSM003550.008681103IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.65E-882134No hitNo description
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
PfamPF139128.2E-683104IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-583104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.13112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99112139IPR007087Zinc finger, C2H2
PfamPF139129.2E-4113134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-5114135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-7338361No hitNo description
SMARTSM003550.036339361IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.533339366IPR007087Zinc finger, C2H2
PfamPF139123.7E-4339362IPR007087Zinc finger, C2H2
PROSITE patternPS000280341361IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-7415442No hitNo description
PROSITE profilePS501578.642420447IPR007087Zinc finger, C2H2
SMARTSM003551420442IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-11420443IPR007087Zinc finger, C2H2
PROSITE patternPS000280422442IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MERGKGHVCK FCGQRFVSGK VLGGHMRSHA FKNPIKSKRM HKKSHMGFQD EGANVGYGLR  60
LNPKRSWRFS GKEEEEQEVE ILCKVCGKAF ESKNSLFGHM RHHSVKQRSE AQRCRDCGKG  120
FESLKALGVH RRVHTRRLKG VDEAERSLAQ KLWIENLGVV RRKRSARFRY RIGSSPSSSS  180
FSGLNLNECR VGYGCGVDIE EAAFCLMMIS RGLGNWDQIS SVTESSNNNP FSVEIKRAKV  240
EMSADCVLDY ENGYSVKGVS EFGEGFLSDE MPKSGFVLYG IEELDVKISE EVEVGLSGLG  300
SMKFGLSKEA VLKACDSVNK VVCATESETF ADSEKKREHM CRICRRVFSS PQALGGHQRV  360
HKRDHKSSGL KNEDGEDRTQ IGTFCETEDK CNPAKLQCSY SSVEQEMETV TVGGSERKGH  420
ICGICLKVFP SGQALGGHKR SHYVKDSEIA TEETRVMKQQ ISDICDAFEV SHKLQEENDG  480
VEYKPWWAGT EQKHEMLVGL IPN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306095.10.0PREDICTED: uncharacterized protein LOC101305788
TrEMBLA0A2P6S4220.0A0A2P6S422_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004306095.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-23C2H2-like zinc finger protein