PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001187.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 239aa    MW: 27348.5 Da    PI: 9.1844
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001187.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.8e-11116206183
                                     EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                              B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                                     f+k+lt+ dv +  +rl ++k+++++        +++ ++++++t +d++g+s+ + ++++ ++   vlt+GW  F+++
  FANhyb_rscf00001187.1.g00005.1 116 FEKQLTHTDVKNDqARLAMSKEHVQKRlipllneNEDLRRGIQVTTYDSEGKSYPMVFKIWVGK-LPVLTGGWTAFCQD 193
                                     99********998899********999***998744555999****************999987.579*********** PP

                                     HT--.TT-EEEEE CS
                              B3  72 ngLk.egDfvvFk 83 
                                     ++L    Dfv+  
  FANhyb_rscf00001187.1.g00005.1 194 HNLVeMQDFVTVW 206
                                     **98678999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.32E-15116220No hitNo description
PfamPF023625.9E-8116218IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-14116214IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-14116221IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0019116220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MARLANEEDD EMMKAVFNLC HMKHALVDST KDKLFIKEQG DAFTVNVARG LPRNQRLQHD  60
VKRKALQISE QEAIYVGQGS ANSNIPQGLF YGNYVPPSLP PVPSLRQFIG ICSEPFEKQL  120
THTDVKNDQA RLAMSKEHVQ KRLIPLLNEN EDLRRGIQVT TYDSEGKSYP MVFKIWVGKL  180
PVLTGGWTAF CQDHNLVEMQ DFVTVWMFRN VATGSLCFVI DSRRLPVLET IKRRRTRSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024171463.11e-139uncharacterized protein LOC112177403
TrEMBLA0A2P6P5L31e-137A0A2P6P5L3_ROSCH; Putative transcription factor B3-Domain family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.17e-31B3 family protein