PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001207.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 175aa    MW: 19367.6 Da    PI: 10.0019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001207.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000634062123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    y+C+ C++ Fs+   L  H  +H
  FANhyb_rscf00001207.1.g00002.1 40 YECKTCNRQFSSFQALGGHRASH 62
                                    99**********99999998887 PP
2zf-C2H212.80.0003789111123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++C++Cg  Fs    L  H+r+H
  FANhyb_rscf00001207.1.g00002.1  89 HECSICGLEFSLGQALGGHMRRH 111
                                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.32E-839111No hitNo description
PfamPF139121.1E-123964IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.7834067IPR007087Zinc finger, C2H2
SMARTSM003550.114062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PROSITE profilePS501579.24589116IPR007087Zinc finger, C2H2
SMARTSM003550.1889111IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-989112IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKTMRNQEVM GLDMAKCLML LSCRLDTKFK KYSSSPNHVY ECKTCNRQFS SFQALGGHRA  60
SHKKPRTLLG GDDDLKSDAK LAQGKPKKHE CSICGLEFSL GQALGGHMRR HRMMNAGFSS  120
SAPSAVDVAS KIPVLMRSNS KRVMCLDMDL NLTPLENDLK VLFGNMAPKV DTLVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302781.11e-122PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A2P6RA881e-108A0A2P6RA88_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004302781.11e-121(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-38C2H2 family protein