PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001211.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family RAV
Protein Properties Length: 302aa    MW: 34560.9 Da    PI: 6.9439
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001211.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2292.7e-0919571255
                             AP2 12 rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                    +g W A+I+       + +r++lg+f +++eAa a++ a+ kl++
  FANhyb_rscf00001211.1.g00006.1 19 NGHWGAQIYA------NhQRIWLGTFKSENEAAMAYDSAAIKLRK 57
                                    578****999......44*************************97 PP
2B390.99.6e-29137230188
                                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                                     f+k+ltpsdv+k++rlv+pkk+a ++        +++   +++l+++d+  r W+++++y+k+s+++v+t+GW++Fvk+
  FANhyb_rscf00001211.1.g00006.1 137 FQKELTPSDVGKLNRLVIPKKYAVKYfpcisetaEENGVDDVELVFYDKVMRAWKFRYCYWKSSQSFVFTRGWNRFVKE 215
                                     99****************************998844555899************************************* PP

                                     HT--TT-EEEEEE-SSS CS
                              B3  72 ngLkegDfvvFkldgrs 88 
                                     n+Lk++D+++F+    +
  FANhyb_rscf00001211.1.g00006.1 216 NNLKANDVITFYTC--E 230
                                     ***********933..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.907866IPR001471AP2/ERF domain
CDDcd000182.88E-191368No hitNo description
SMARTSM003801.8E-101772IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-111867IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-131866IPR001471AP2/ERF domain
PfamPF008478.1E-52057IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.2E-33134233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-28136232IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-27136227No hitNo description
PfamPF023623.0E-26137231IPR003340B3 DNA binding domain
SMARTSM010191.9E-22137239IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14137250IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTTMMSHLLQ DSKGGAQQNG HWGAQIYANH QRIWLGTFKS ENEAAMAYDS AAIKLRKGND  60
SHRNFPWTNL TIQEPDFQNH LTTEEVIKMI RDGSYPSKFD AFVRSQTQAH SEEVGKGSTP  120
NQIRVHGNGQ VLCRQLFQKE LTPSDVGKLN RLVIPKKYAV KYFPCISETA EENGVDDVEL  180
VFYDKVMRAW KFRYCYWKSS QSFVFTRGWN RFVKENNLKA NDVITFYTCE SAELVRDESG  240
KVTTTFSLID VIHSEGDNNK CLVEEEGKLE LNLGGNSSYK LQENKAAMEE EKEVRLFGVN  300
IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2913622613100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296303.20.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-102RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A3Q8TBC10.0A0A3Q8TBC1_FRAAN; Transcription factor RAV4
STRINGXP_004296303.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-103RAV family protein