PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001221.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 461aa MW: 52340.4 Da PI: 6.5069

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001221.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.7	1.7e-22	60	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w++++ FANhyb_rscf00001221.1.g00003.1 60 FYNCYAKQHGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSDAN-----RPRPETRTGCPAMVKFRLMESNRWRIIE 132 9*************99997.66779***********9988.....************************ PP FAR1 81 leleHnHela 90 +eleHnH ++ FANhyb_rscf00001221.1.g00003.1 133 VELEHNHLIS 142 *****876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-19	60	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.0E-27	263	356	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MDEVSLNTEP AGDDDADGYE IEGDCAMTEF VSQTGIMQGE NPLPPAAGME FDTYEDVYYF 60 YNCYAKQHGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SDANRPRPET RTGCPAMVKF 120 RLMESNRWRI IEVELEHNHL ISPASGKFYK SHKSIGGGTK RSLQLDSAEE VQKIRLFRTV 180 IVDSEGHRSI DVDEGESGSK VDYSNQLRLK EGDAQAVQNF FSCLQLMDPD FFYVVDLNEK 240 GCLRNLFWAD ARSRVAYTYF SDVVAIDTTC LENKFEVPLV SFCGVNHHGQ SVLLGCGLLA 300 SGTIESYTWL FRAWLTCILG RPPQAIITDQ CRTLQTAIAD VFPRASHCLC LSQIMHKIPE 360 NLGGLFEYEA IKAAFIRAVH YSFRVEEFEA AWEDMVQRHG IRDHNWLQAL YEDRKQWVPV 420 YLRDIFLAGM SPMQPNSSSA GSLGRFGFKK LKLYVQIGKS F

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MDEVSLNTEP AGDDDADGYE IEGDCAMTEF VSQTGIMQGE NPLPPAAGME FDTYEDVYYF  60
YNCYAKQHGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SDANRPRPET RTGCPAMVKF  120
RLMESNRWRI IEVELEHNHL ISPASGKFYK SHKSIGGGTK RSLQLDSAEE VQKIRLFRTV  180
IVDSEGHRSI DVDEGESGSK VDYSNQLRLK EGDAQAVQNF FSCLQLMDPD FFYVVDLNEK  240
GCLRNLFWAD ARSRVAYTYF SDVVAIDTTC LENKFEVPLV SFCGVNHHGQ SVLLGCGLLA  300
SGTIESYTWL FRAWLTCILG RPPQAIITDQ CRTLQTAIAD VFPRASHCLC LSQIMHKIPE  360
NLGGLFEYEA IKAAFIRAVH YSFRVEEFEA AWEDMVQRHG IRDHNWLQAL YEDRKQWVPV  420
YLRDIFLAGM SPMQPNSSSA GSLGRFGFKK LKLYVQIGKS F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467070.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2P6RVY4	0.0	A0A2P6RVY4_ROSCH; Putative transcription factor FAR family
STRING	XP_004305499.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-136	FAR1-related sequence 6