PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001251.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 283aa MW: 30782.4 Da PI: 6.5915

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001251.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00042	185	223	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +++ + +K + a++L +A+ YI+ Lq FANhyb_rscf00001251.1.g00004.1 185 RKEKLGDRITALHQIVSPF-----GKTDTASVLLEAIGYIRFLQ 223 6677888999999999987.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.153	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-10	183	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.36E-5	183	227	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-7	187	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MMAGNPNWWS MHPPSSIFPS QLGSSSSLPQ LINSFPADQH NLEPPQSWSQ LLLGGLSGQD 60 QDNFGSLNHF PQSYPRVNPA VDSNIIKQEI NSQNNLCGGD GGHEEFQAPY INRPSWSAVQ 120 INMPVSSPRL SSVTSLSSNN MLDFSYNQKN QHADHSSECD SPPAGGMCKK ARVQPSSSQP 180 PLKVRKEKLG DRITALHQIV SPFGKTDTAS VLLEAIGYIR FLQSQIEALS SPYLSNASKN 240 MRNNPHSVQG ERNCVFPEDP GQGTSDHVGV LVVIMCISCG MVP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024186039.1	1e-163	transcription factor bHLH68-like isoform X1
Refseq	XP_024186040.1	1e-163	transcription factor bHLH68-like isoform X2
TrEMBL	A0A2P6RX59	1e-162	A0A2P6RX59_ROSCH; Putative transcription factor bHLH family
STRING	XP_004305282.1	1e-124	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	6e-45	bHLH family protein