PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001299.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 255aa    MW: 28956.9 Da    PI: 9.0902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001299.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0596115120
                                     EEETTTTEEESSHHHHHHHH CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                     + C++C+k+F+r  n++ H+
  FANhyb_rscf00001299.1.g00001.1  96 FACSICSKTFNRYNNMQMHM 115
                                     78*****************9 PP
2zf-C2H216.62.3e-05180202123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     + C +Cgk+F  k + ++H +++
  FANhyb_rscf00001299.1.g00001.1 180 FMCRKCGKTFAVKGDWRTHEKNC 202
                                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-588119No hitNo description
Gene3DG3DSA:3.30.160.609.7E-696115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1796118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4596123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM00355190143175IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.82E-6166200No hitNo description
Gene3DG3DSA:3.30.160.605.4E-6176200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704180200IPR007087Zinc finger, C2H2
SMARTSM0035535180200IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
FNDTKPVKRE DIGVWREGSG VKEEQIENVT VALHIGLPNS TTANDEKNVS DGVKEEDAVL  60
PITKNRFNVN RYSATATESR FWIPTPAQIL VGPMQFACSI CSKTFNRYNN MQMHMWGHGS  120
EFRKGPDSLK GAQPAAMLRL PCYCCAQGCK NNINHPRAKP LKDFRTLQTH YKRKHGAKPF  180
MCRKCGKTFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHIRSFGKG HSPRTCIDGF  240
HEDDQKECIT GSEDE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291611.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-110ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2P6QDI61e-176A0A2P6QDI6_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004291611.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-112WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]