PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001330.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 704aa    MW: 77094.8 Da    PI: 7.2686
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001330.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-093954321954
                                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  FANhyb_rscf00001330.1.g00001.1 395 FEHflHPYPKDSDKHLLAKQTGLTRSQVSNWFINARVR 432
                                     554459******************************88 PP
2BELL119.61.4e-38259330172
                            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                     erqe+q+kk kL+++l+eVd+rY+qy+ q+q+vi+sFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  FANhyb_rscf00001330.1.g00001.1 259 ERQEIQMKKGKLITMLDEVDQRYRQYHRQMQMVIASFEQAAGIGSARTYTALALQTISKQFRCLKDAITNQI 330
                                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-64184328IPR006563POX domain
PfamPF075261.0E-49189327IPR006563POX domain
PROSITE profilePS5007112.082373436IPR001356Homeobox domain
SMARTSM003891.7E-8376440IPR001356Homeobox domain
CDDcd000868.38E-12376437No hitNo description
SuperFamilySSF466891.71E-16377442IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-28379442IPR009057Homeodomain-like
PfamPF059201.7E-17393432IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MATYYHGNSE IQSPDGGLQT LVLMNHGGYV PYSDATQQQQ SPSAAATNQQ LVFLNSAGAN  60
NQLAQGSTLP HAPPSHTQQF VGIPLPTVST QDPSNSQAMH PHHDMAALHA FMPRIQTQYA  120
LWNSIDPSAR DTPRAQQGLS LSLSSQQPGF GSFRGADREV PTGEDIRVSS GSTSSASGVT  180
NGVSGMQSVL LSSKYLKAAQ ELLDEVVNVG NGMRTELPKK GNGNQSKAMA ESSMAAAGDG  240
SVGGDQDSGK RAVELSTAER QEIQMKKGKL ITMLDEVDQR YRQYHRQMQM VIASFEQAAG  300
IGSARTYTAL ALQTISKQFR CLKDAITNQI RAANKSLGEE DCSGGKIEGS RLKYVDHQLR  360
QQRALQQLGM IQHNAWRPQR GLPERSVSVL RAWLFEHFLH PYPKDSDKHL LAKQTGLTRS  420
QVSNWFINAR VRLWKPMVEE MYLEEIKENE LNGSSEKISK SNEDSASKST PPQERSPATD  480
QNQTNSTFNS KQETSTNHIA APPSMSMSMS SASTSPTNMV RNQSGFSLIG SSELDGITQG  540
SPKKPRSTEI MHSPNSMMNH MDVKPQEVSN EQVSMKFGDE RQSRDGYSFM GGQTNFIGNF  600
GQYPIGEIGR FDTDQFTPRF SGNSVSLSLG LPHCENLSLS GAHHQTFLPN QNIQLGRRVD  660
HIGEPNDQFG TMNTSAPHSS AGFESIDIQN RKRFVAQLLP DFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-16382440563Homeobox protein Meis2
3k2a_B8e-16382440563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467196.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2P6RCJ70.0A0A2P6RCJ7_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004303380.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-152BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]