PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001361.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 167aa MW: 18511.2 Da PI: 9.7196

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001361.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34	7e-11	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++W +eE+ l+ +v ++G g W+tI + R+ ++k++w+++ FANhyb_rscf00001361.1.g00001.1 5 KQKWNAEEEAALKAGVLKHGAGKWRTILKDPEfarilYLRSNVDLKDKWRNL 56 79*********************************88*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.767	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-15	2	63	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-5	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-12	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-7	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	1.03E-17	6	56	No hit	No description
SuperFamily	SSF46785	2.72E-7	115	154	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.9E-7	116	156	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	14.569	118	167	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MGAPKQKWNA EEEAALKAGV LKHGAGKWRT ILKDPEFARI LYLRSNVDLK DKWRNLSVMV 60 NGWGSRDKYR TVTRRMPQIP KEDSSMALSA GQSDEEVMDA KPMAASSDSQ QVSAPKRSIV 120 RLDDLIMEAI SSLKDPGGSN KTAIAAYIEM RGKDDNDVFP CVQSAKI

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011457840.1	1e-104	PREDICTED: telomere repeat-binding factor 1-like
Swissprot	Q8VWK4	5e-61	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A2P6PL55	6e-96	A0A2P6PL55_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004289777.1	1e-103	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1453	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-63	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]