PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001365.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 275aa MW: 31341.8 Da PI: 5.9842

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001365.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	73	3.8e-23	188	237	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+dl++yF+l+i++A+ +L c+Tv+KriCR++G++RWP Rkiks+ FANhyb_rscf00001365.1.g00003.1 188 AKMKLDDLRAYFHLTIEEASEQLRFCPTVVKRICRKFGVSRWPARKIKSI 237 7899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.472	177	257	IPR003035	RWP-RK domain
Pfam	PF02042	7.7E-22	190	237	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
FGKNVMPPPV VAPPPPIINS GCCGCQVLRE IVHFSRDYIM TLTIHGRLGA ICHAIQESRA 60 NYLYDSGVSS EPHYQKLDFC NKGIEEVKQY LTQYCLERKV EGYIMQQDPL QAFYQTLCVG 120 MDGEWDDILS YPDEFIPEDF DATDDFISPN SERVEEMDQS AAVATMNTIG KGPRLPRYSL 180 AEQRERAAKM KLDDLRAYFH LTIEEASEQL RFCPTVVKRI CRKFGVSRWP ARKIKSIEKR 240 ISSLRPLLNS CSESTRGHVA AEIERLETEV ARLVP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301476.1	0.0	PREDICTED: uncharacterized protein LOC101302563
TrEMBL	A0A2P6PER9	1e-158	A0A2P6PER9_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004301476.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-14	RWP-RK domain-containing protein