PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001367.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 199aa MW: 21983.2 Da PI: 6.6304

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001367.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H FANhyb_rscf00001367.1.g00001.1 27 YECTFCKRGFSNAQALGGHMNIH 49 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.67E-7	24	54	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	25	53	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.572	27	54	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0099	27	49	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MESGDQQTPE NSGDQQVTSQ VAAAKSYECT FCKRGFSNAQ ALGGHMNIHR KDKAKLKQVS 60 SSANIVETKQ QQQRLPVEIP KMPQSYSPIL LKVNPSITSS EAVADHIERS ATTIRGSSWP 120 ADWFLNDKEG ENKLRHQLPL FSQAPSDQDH HSQGGQQQQL EDHGNQSDKG SDLDLELRLG 180 PEPQDSSSTP GKATTRKFF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295977.2	1e-146	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A2P6QJ55	1e-105	A0A2P6QJ55_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004295977.1	1e-145	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3335	31	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	3e-16	C2H2 family protein