PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001369.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HB-other
Protein Properties Length: 655aa    MW: 72696.1 Da    PI: 8.3339
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001369.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-19460157
                                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                                    +r Rt++t+ q e+Le+++  +r+ps++++eeL+k+l+L  +qV+vWF NrRak+++
  FANhyb_rscf00001369.1.g00001.1  4 KRLRTKWTPIQRETLEKAYSVERTPSEATKEELSKQLELGYEQVTVWFMNRRAKDRR 60
                                    789****************************************************97 PP
2Homeobox38.71.6e-1266115352
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                                     k+ ++t++ql +L++ ++++++ps ++ree+ kk+g++e qV+ W+  +R
  FANhyb_rscf00001369.1.g00001.1  66 KKSRMTRHQLATLQKTYASEKNPSVSTREEIGKKVGMSEIQVRLWYNKKR 115
                                     56679*****************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.892161IPR001356Homeobox domain
SMARTSM003893.0E-19365IPR001356Homeobox domain
CDDcd000865.76E-17461No hitNo description
SuperFamilySSF466894.71E-18461IPR009057Homeodomain-like
PfamPF000465.3E-17460IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-16563IPR009057Homeodomain-like
PROSITE patternPS0002703659IPR017970Homeobox, conserved site
SuperFamilySSF466894.71E-966118IPR009057Homeodomain-like
PROSITE profilePS5007111.90466121IPR001356Homeobox domain
PfamPF000463.4E-1066116IPR001356Homeobox domain
CDDcd000861.78E-866126No hitNo description
SMARTSM003896.0E-666125IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1068122IPR009057Homeodomain-like
Gene3DG3DSA:3.30.40.102.6E-16140228IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.53E-13141228No hitNo description
PROSITE profilePS5027115.503160225IPR001607Zinc finger, UBP-type
SMARTSM002900.0049167214IPR001607Zinc finger, UBP-type
PfamPF021481.1E-12167224IPR001607Zinc finger, UBP-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MAIKRLRTKW TPIQRETLEK AYSVERTPSE ATKEELSKQL ELGYEQVTVW FMNRRAKDRR  60
QGLVAKKSRM TRHQLATLQK TYASEKNPSV STREEIGKKV GMSEIQVRLW YNKKRFEDQG  120
KDRKKRGPGA KKAPKSALSS SCDHLAFVSA DLTGIPNPDT PCKSYTRCQN PNENWCCLCC  180
KDVFCSVDLT NGHLFQHFKQ TNHCLAVSCS DKSVWCYSCN SFLDAQAIPQ LSVFSSSSNA  240
SGEPSSSSRL ETPDASKDSS SSSRLENLDA LMVDVTDLIS KPSPCPNFHP LEDNLFVDQD  300
KLAVAKKGLQ KIFDCGLEAL ADPHVQEEFL AYSAAVLSVD SCPSDLKAIL SSFRGNLSEQ  360
TCAFLQAQHE LKVASDLSAS ITERRFVLRY HHSKYAEVKK QIIASDEKVA NLKAMIKRLE  420
ASLAEEKSNR EKIDRVLDSI ETGVMDARDG LLSDIEQVSA MEGTTKAANQ LVAQRHSAWE  480
NLRSTFTEVF LRIVHCSDVG LPEYVSLTKA LENSFASRLV LEIFVQSDVG IPVGIGFVCP  540
ARTLSAVHLG TGTWVSIMSR QIIVLLSTAA ENPIVRCFSC KVATNARQVI RRLQELSSSS  600
NCDHHLASIS CDPTAVPIPD TPCKRRQSIV FVSMLVSGLC VLACKWTPPA CRPRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6e8c_A2e-111012112138Double homeobox protein 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15259NRRAKDRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457861.10.0PREDICTED: uncharacterized protein LOC101313073
TrEMBLA0A2P6PLB80.0A0A2P6PLB8_ROSCH; Putative transcription factor Homobox-WOX family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF949422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.13e-12homeobox-1