PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001369.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 160aa MW: 17668.7 Da PI: 6.5212

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001369.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	28.8	3.6e-09	8	49	56	97
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 ++++sl++eA r+ +Pv+Ga+g++l+++++++q+++e++l FANhyb_rscf00001369.1.g00004.1 8 ALFQSLLFEAVGRTINPVNGATGLLLAGNWKVCQAAVETVLS 49 689*********************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.7E-5	8	47	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
SIFVVVSALF QSLLFEAVGR TINPVNGATG LLLAGNWKVC QAAVETVLSG GALEPLPEYS 60 RRGVHHVKQQ RREERYFSKY SNRKRQALLV SDHVDGDDER PDLDLSLKAS SELRRDDHDR 120 AATPSSVEVS ETSTFSRSGS SSADYTTNDL EGTKLLRLFV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289796.1	3e-90	PREDICTED: LOB domain-containing protein 37-like
TrEMBL	A0A2P6PLE0	3e-76	A0A2P6PLE0_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004289796.1	1e-89	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-24	LOB domain-containing protein 38