PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001440.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YC
Protein Properties Length: 219aa    MW: 24693.4 Da    PI: 10.4704
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001440.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC292.3e-0984132755
                           NF-YC   7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfi 55 
                                     e+++++++d+k  ++P+ r+k+il+ d+   +is++a  l+ ka e f+
  FANhyb_rscf00001440.1.g00002.1  84 EEEVDEKEDVKSYTFPMERVKRILREDDSDLRISSDAVFLINKATEKFL 132
                                     5678999*********************99****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.5E-1666156IPR009072Histone-fold
PfamPF008085.7E-1697157IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.9E-1898200IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MATPKKATPP KKTKETKKPS ATISKPSSTQ KKEDNKTKKK TSNGTAAAAK SPTSKSHKSR  60
AQNGAKTTKP PTPKSKQNGK RVKEEEVDEK EDVKSYTFPM ERVKRILRED DSDLRISSDA  120
VFLINKATEK FLEKFSEDAH KCCVRDRKKA LAYKHLYQWY IIQMFSGNLC DKKLVLYPCA  180
LASVVGKMKR YEFLSDFVPE KIKAGDALAK REQVQDGTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461702.12e-85PREDICTED: DNA polymerase epsilon subunit C
TrEMBLA0A2P6QHI52e-72A0A2P6QHI5_ROSCH; Putative transcription factor Hap3/NF-YB family
STRINGXP_008358413.12e-63(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.18e-26nuclear factor Y, subunit C10