PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001478.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARR-B
Protein Properties Length: 587aa    MW: 66139.8 Da    PI: 4.9263
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001478.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.42.1e-20227280155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     k r++Wt+ + ++F ++ ++L G+ekA+P +i +lm+v+gLt++hv+SHLQkYR 
  FANhyb_rscf00001478.1.g00001.1 227 KRRVVWTEPMKKQFDDVYKHL-GPEKAVPMNIQKLMNVEGLTRSHVASHLQKYRE 280
                                     689******************.********************************6 PP
2Response_reg58.83e-206614725105
                                     EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS CS
                    Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKp 101
                                     + +++ ++++ale+l+e++  +Dl++ D+ mp+m+G++ll++++ e  +lp+++v++++++e++++ +  Ga  +l+Kp
  FANhyb_rscf00001478.1.g00001.1  66 NLTTVNQAKQALEILRENKnkFDLVISDVWMPEMNGFQLLQQLAHEM-DLPVVMVSSSDDNELVKKGILNGACCYLVKP 143
                                     678999*********888778**********************7654.8****************************** PP

                                     --HH CS
                    Response_reg 102 fdpe 105
                                     +++e
  FANhyb_rscf00001478.1.g00001.1 144 VNIE 147
                                     *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-2619165IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.3E-3220164No hitNo description
SMARTSM004486.1E-2021152IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.34822157IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.61E-2224157No hitNo description
PfamPF000723.2E-1666148IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466891.11E-14225284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-20225284IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-19227280IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MMANARDQLG GSVGDRFSDG MRVLALDDDV TYLKILEASL RKCNYEGLGC VTEPPSWYKL  60
AIKCLNLTTV NQAKQALEIL RENKNKFDLV ISDVWMPEMN GFQLLQQLAH EMDLPVVMVS  120
SSDDNELVKK GILNGACCYL VKPVNIEVFE TIWQHVFQRK NLNSKDRCKS FDQDKLCNGA  180
GEGEEVTSAS SSSEKNGEHR IKRKHQNEDD EGGEDEDENE ERSAPKKRRV VWTEPMKKQF  240
DDVYKHLGPE KAVPMNIQKL MNVEGLTRSH VASHLQKYRE QLRKGSSNQV KQRASMVVDL  300
GRKDSSSYVP RMSPVDESGG RRLSNAVPLS SYILPRMLSR SNFPTGIIVN PSSHLLRPGQ  360
SQNLCSSLNT STLQGNPQQK HGTLVTDFYS SRGMNSLNAK LLDNALCRSS NFLDNNGYCQ  420
SWQGGALFSG SVEDLRENVH IENQGPVAPT TYCTPDIWWE DHTQDYNHER NIPYLVSNDV  480
VDPPCRTLDQ NDAVCHRSME SSLFDQFNGD NATIVQCAEV ENSTMQTKIE PNEQEKSNDG  540
LVQNSLELLD NQVEFGFLDG EFGFDAIQKQ KENEDYNFQD GGLEFHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-15229283357Transcription factor LUX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467043.10.0PREDICTED: two-component response regulator ARR1-like
TrEMBLA0A2P6RVP71e-145A0A2P6RVP7_ROSCH; Putative response regulator and transcription factor RR-A-type family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3439722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.14e-64response regulator 12