PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001546.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C3H

Protein Properties

Length: 259aa MW: 28408.4 Da PI: 7.6219

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001546.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.9	2.3e-10	93	117	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ FANhyb_rscf00001546.1.g00001.1 93 FKTKLCCKFRA-GTCPYVTNCNFAHS 117 69*******.***********8 PP
2	zf-CCCH	19.2	2.2e-06	166	191	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ FANhyb_rscf00001546.1.g00001.1 166 YKGRHCKKFYTEEGCPYGDNCTFLHD 191 78888********************7 PP
3	zf-CCCH	44.1	3.5e-14	228	253	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg FANhyb_rscf00001546.1.g00001.1 228 WKTRICNKWELTGYCPFGSKCHFAHG 253 8************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	3.77E-8	90	123	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-14	90	125	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.003	92	118	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.131	92	119	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-7	93	117	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.2E-10	163	193	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.93E-8	164	193	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.058	165	192	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.183	165	193	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-15	224	254	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-9	225	253	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.5E-9	227	254	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.422	227	255	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-11	228	253	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSYGGRETNV VQVITGNGGG GDMWSGDQAV WATEDEYQVW NNGDAMGDTM SNSNYDQRQS 60 QSRSGSEPPN KKSRNTPDVT SSNRSKAIGK MFFKTKLCCK FRAGTCPYVT NCNFAHSIEE 120 LRRPPPNWQE IVAAHEEEKA VSSEPREEFQ IPIVTTGYGV ETQRSYKGRH CKKFYTEEGC 180 PYGDNCTFLH DESSKNRESV AISLGPGGYG GAAAAAAAGG ANNKPSNWKT RICNKWELTG 240 YCPFGSKCHF AHGVAGMCY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300410.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 56
Swissprot	Q9LQM3	2e-92	C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBL	A0A2P6PA58	1e-170	A0A2P6PA58_ROSCH; Putative transcription factor C3H family
STRING	XP_004300410.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7751	33	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	2e-93	C3H family protein