PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001556.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 816aa    MW: 90127.1 Da    PI: 8.6856
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001556.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.51.1e-086206522254
                                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     ++yp+ +++  LA+++gL+ +qV++WF N R +
  FANhyb_rscf00001556.1.g00001.1 620 HPYPTDTDKHILASQTGLSRNQVSNWFINARVR 652
                                     89*****************************87 PP
2BELL1019.3e-33467535472
                            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                     e q+kkakLl ++eeV+++Ykqy++q+++v+ssFe v gl sa+pY+slAl+++Sr+F+cL   i++q+
  FANhyb_rscf00001556.1.g00001.1 467 EYQQKKAKLLYMQEEVCRKYKQYHQQMEMVVSSFESVSGLSSATPYISLALNTVSRQFKCLTGSIKDQL 535
                                     89***************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-36358533IPR006563POX domain
PfamPF075261.3E-39363531IPR006563POX domain
PROSITE profilePS5007111.629593656IPR001356Homeobox domain
CDDcd000862.08E-10596657No hitNo description
SMARTSM003891.1E-7596660IPR001356Homeobox domain
SuperFamilySSF466891.33E-16598663IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-26599660IPR009057Homeodomain-like
PfamPF059202.5E-17613652IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MRGSSMTMVV MFSEGVQLNH CLPKQMTDRV RLSPTAFFYV SERYSLKLME MSGFRPSESN  60
HVAQQSRRDK LRVQHTSNLS HPHSDLPNNS PAQQNPDIVQ VRNVRNANNL LFDPTLFSPE  120
LLNFSINANH AFASSTQDLG DESPQNYGNW RSLNPHQNLD NWDTNYPTGT TSNHHMYVRE  180
VNNTSPSTPS HLKPSIYHGY QHFSSSSPMY HNTLQDVVTP ASAGGIQQDQ LEMASWAQGY  240
VNQSPTLGFD NSSSWMDRPI GSNRHNWTGG GELRSAMSDY SNQQGLSLSL SSNPPPSQGL  300
QASSSRKSGG YLCSMMKPSV ISKACGTTKS LQELVGTSNA STSSAAYHRS TGPLGPFTGY  360
ATILKSSKFL KPAQQLLEEF CRVNDHSKAF KTCEASERIS KDQASASASA SVSVSNDQAA  420
NMTQNSVVAN KGRNNSAASS SAFYGSNEIS SDGGAAASTS SGSFRPEYQQ KKAKLLYMQE  480
EVCRKYKQYH QQMEMVVSSF ESVSGLSSAT PYISLALNTV SRQFKCLTGS IKDQLKHIRK  540
ALGEDFSSAK IASTTGYNSI SDKTVGKQKY VGLSLQKHKA AGGLDAGFSE HQQHVWRPQR  600
GLPDRSVAIL RAWLFDHFLH PYPTDTDKHI LASQTGLSRN QVSNWFINAR VRVWKPMVEE  660
IHMLETRGSM EACQDLGKDG NSPTEGTSRP INEQLGMHRA ISDRQLESSG MGSLRDAPNV  720
EVQQSQEIKR SRIECQVPSS MDSALMGFVP YNRSGLEVGG LAAVSLTLGL RHGVESVQQQ  780
QQQQQQQQQQ QQQLHEQDEY QLRRQSGGYM IHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14602660563Homeobox protein Meis2
3k2a_B1e-14602660563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459366.10.0PREDICTED: BEL1-like homeodomain protein 8 isoform X1
RefseqXP_011459367.10.0PREDICTED: BEL1-like homeodomain protein 8 isoform X1
RefseqXP_011459368.10.0PREDICTED: BEL1-like homeodomain protein 8 isoform X1
TrEMBLA0A2P6QH470.0A0A2P6QH47_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004291636.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-75BEL1-like homeodomain 8