PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001576.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 286aa    MW: 32779 Da    PI: 5.0826
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001576.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-1856108456
                                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     +++++ +q+++Le  Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  FANhyb_rscf00001576.1.g00001.1  56 KRRLSLHQVKALEISFEVENKLEPERKVKLAEELGLEPRQVAIWFQNRRARWK 108
                                     457899**********************************************9 PP
2HD-ZIP_I/II126.71e-4055146293
                     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                     kkrrls +qvk+LE sFe e+kLeperKv+la+eLgl+prqva+WFqnrRAR+ktkqlE+dy++Lk+ ydalk++ ++L
  FANhyb_rscf00001576.1.g00001.1  55 KKRRLSLHQVKALEISFEVENKLEPERKVKLAEELGLEPRQVAIWFQNRRARWKTKQLERDYSVLKADYDALKDNYDSL 133
                                     9****************************************************************************** PP

                     HD-ZIP_I/II  81 ekeveeLreelke 93 
                                     e++++ L+e+lke
  FANhyb_rscf00001576.1.g00001.1 134 ERQNKVLAEKLKE 146
                                     **********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.56850110IPR001356Homeobox domain
SuperFamilySSF466893.76E-1853112IPR009057Homeodomain-like
SMARTSM003897.6E-1753114IPR001356Homeobox domain
CDDcd000861.82E-1555111No hitNo description
PfamPF000461.2E-1556108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-1957117IPR009057Homeodomain-like
PRINTSPR000318.9E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000318.9E-690106IPR000047Helix-turn-helix motif
PfamPF021831.1E-14110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MKRFSRSDSL GTLIPNYPPK EEKHNTRNNG GYSKEFQAIL ESYDQEDCGE EISVKKRRLS  60
LHQVKALEIS FEVENKLEPE RKVKLAEELG LEPRQVAIWF QNRRARWKTK QLERDYSVLK  120
ADYDALKDNY DSLERQNKVL AEKLKELKAK LCRDNAESDQ SVKEESPISV YKSSVMEQSR  180
DQDLSDNGDN AGLDSYKDLK SKDGSSDSES NGAVKEESNG NESSMGYNGH SLSSNSMMNW  240
FQLSDSRSGN KGNHQTQFVR MEEQSLFSTE ESCNFFSVDQ APSLHW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464610.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1Q1NMS01e-178A0A1Q1NMS0_ROSHC; HB6
STRINGXP_004299676.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-50homeobox protein 16