PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001660.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 591aa    MW: 66928 Da    PI: 4.2982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001660.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-1765122355
                             AP2   3 ykGVrwdkkrgrWvAeIrdpseng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     y+GVr++  +g+Wv+eIr+ps+n      k+  r +lg+f ta eAa a+++a+k+++g
  FANhyb_rscf00001660.1.g00001.1  65 YRGVRQRI-WGKWVSEIRVPSSNThvlksKKfNRLWLGTFNTAVEAALAYDKAAKAIYG 122
                                     9****998.**********9998789966558***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.2E-3364136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-2764132IPR001471AP2/ERF domain
PROSITE profilePS5103220.70564130IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1765132IPR016177DNA-binding domain
CDDcd000185.85E-2865132No hitNo description
PfamPF008471.2E-1065122IPR001471AP2/ERF domain
PRINTSPR003675.9E-96576IPR001471AP2/ERF domain
PRINTSPR003675.9E-996112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MFGDSKKGKR LKVAKTLVKL EKCSESFGCA KDGLVNPVPR RMPTFGSRKG CMRGKGGPEN  60
MNYSYRGVRQ RIWGKWVSEI RVPSSNTHVL KSKKFNRLWL GTFNTAVEAA LAYDKAAKAI  120
YGPVARLNFP ESLETSMLDE TTELGDNASE FEDGMVEGAK QEDEVLDATV KDPVNEWRCE  180
ANSVKCELQM EDQHVDNDVE VEELAINSVR ESVEECHSEL KYVKLELETK DEIAKDDVEV  240
QALAIDNVRE SEDEWPWEPK YVKCELENED QLVRNDVEVA VTTNNVREYE NVWHWEPKYV  300
NCDLETQDKL LQSNAEVERL AMNNVTDEEF QAGSYVGSSN NSHDNHLDKY LQVGKFDSVP  360
NEKPCTNLDF SKILSRYSND YLDTELVDVK CNPENDCNPS NDVIVDALVM SKPIEKEFAV  420
ILDSGDNSLH IEPINVASNN LIAKLGEYEK NVLPPNEFQG DIAETIKPNG HNGFGDNNIC  480
LQEHDEQIDV AYIPRPDIKP SKDIETQKDI DNNFSHLHSL SFDETYCTEL HNLPKQLQAA  540
DGIPGSFNYM EEECSGGDFN VDWSRQNYFS GEFEDNVLPD SWFSYSHGGS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1565130360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1565130663ATERF1
3gcc_A1e-1565130663ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302563.10.0PREDICTED: uncharacterized protein LOC101313427
TrEMBLA0A3Q8TB180.0A0A3Q8TB18_FRAAN; Transcription factor ERF32
STRINGXP_004302563.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2220944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.12e-26ERF family protein